PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61201-61250 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | homalt | 98.6472 | 98.5447 | 98.7500 | 88.7981 | 474 | 7 | 474 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 65.9704 | 49.6410 | 98.3092 | 51.1216 | 484 | 491 | 407 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2646 | 97.5659 | 98.9733 | 55.4437 | 481 | 12 | 482 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.7142 | 99.2593 | 98.1752 | 59.8829 | 268 | 2 | 269 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 62.1033 | 45.2072 | 99.1667 | 43.6090 | 731 | 886 | 595 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.2500 | 86.6667 | 76.4706 | 96.7803 | 13 | 2 | 13 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.7509 | 80.8917 | 93.5252 | 60.6232 | 127 | 30 | 130 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 62.5000 | 71.4286 | 74.5455 | 5 | 3 | 10 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8753 | 98.4496 | 97.3077 | 64.2857 | 254 | 4 | 253 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l100_m0_e0 | het | 97.2058 | 97.1235 | 97.2881 | 83.7734 | 574 | 17 | 574 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | * | 97.4722 | 97.1774 | 97.7688 | 87.3525 | 482 | 14 | 482 | 11 | 4 | 36.3636 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | het | 97.5138 | 97.2452 | 97.7839 | 84.6774 | 706 | 20 | 706 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.9986 | 99.1404 | 98.8571 | 84.4858 | 346 | 3 | 346 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | het | 97.6378 | 97.3822 | 97.8947 | 85.3565 | 744 | 20 | 744 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.0398 | 99.1758 | 98.9041 | 85.4408 | 361 | 3 | 361 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | het | 97.6562 | 97.4026 | 97.9112 | 85.4539 | 750 | 20 | 750 | 16 | 4 | 25.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0604 | 99.1935 | 98.9276 | 85.4807 | 369 | 3 | 369 | 4 | 4 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.4047 | 99.1254 | 97.6945 | 56.8408 | 340 | 3 | 339 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 77.9566 | 64.5649 | 98.3573 | 34.9800 | 512 | 281 | 479 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.4512 | 54.9658 | 98.0843 | 26.8908 | 321 | 263 | 256 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.3190 | 98.8713 | 97.7728 | 36.2216 | 438 | 5 | 439 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 93.1730 | 96.8750 | 89.7436 | 89.4452 | 62 | 2 | 70 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 93.0501 | 95.7746 | 90.4762 | 89.6552 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 93.0501 | 95.7746 | 90.4762 | 89.8673 | 68 | 3 | 76 | 8 | 4 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.8527 | 89.3939 | 86.3636 | 84.4706 | 59 | 7 | 57 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.3508 | 91.6667 | 95.0980 | 76.7654 | 99 | 9 | 97 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.8889 | 91.9540 | 86.0215 | 94.9264 | 80 | 7 | 80 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 96.1223 | 44 | 2 | 43 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.2473 | 92.2222 | 86.4583 | 95.4717 | 83 | 7 | 83 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.9670 | 95.8333 | 83.0189 | 96.5762 | 46 | 2 | 44 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.4472 | 91.7526 | 87.2549 | 95.2909 | 89 | 8 | 89 | 13 | 4 | 30.7692 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 89.5935 | 96.0784 | 83.9286 | 96.4602 | 49 | 2 | 47 | 9 | 4 | 44.4444 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8103 | 99.7360 | 99.8847 | 56.3092 | 14731 | 39 | 14733 | 17 | 4 | 23.5294 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.4161 | 95.5385 | 99.3691 | 21.9212 | 621 | 29 | 630 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 94.9786 | 98.7603 | 91.4758 | 91.3901 | 717 | 9 | 719 | 67 | 4 | 5.9702 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 95.1589 | 98.8220 | 91.7576 | 91.8438 | 755 | 9 | 757 | 68 | 4 | 5.8824 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 95.1951 | 98.8312 | 91.8171 | 91.9100 | 761 | 9 | 763 | 68 | 4 | 5.8824 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m1_e0 | het | 93.8151 | 98.7552 | 89.3458 | 92.9596 | 476 | 6 | 478 | 57 | 4 | 7.0175 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e0 | het | 94.0939 | 98.8327 | 89.7887 | 93.3263 | 508 | 6 | 510 | 58 | 4 | 6.8966 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | het | 94.0832 | 98.6590 | 89.9130 | 93.3633 | 515 | 7 | 517 | 58 | 4 | 6.8966 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8504 | 96.8504 | 96.8504 | 78.9037 | 123 | 4 | 123 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3525 | 99.2040 | 99.5015 | 66.2630 | 997 | 8 | 998 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3640 | 99.1541 | 99.5747 | 61.1334 | 1641 | 14 | 1639 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 50.8083 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4204 | 99.1329 | 99.7095 | 36.8209 | 1715 | 15 | 1716 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | * | 95.0392 | 95.2880 | 94.7917 | 95.0541 | 182 | 9 | 182 | 10 | 4 | 40.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.2967 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 87.8505 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.8750 | 95.8763 | 97.8947 | 75.5627 | 372 | 16 | 372 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | * | hetalt | 95.4538 | 91.3354 | 99.9611 | 60.3706 | 10225 | 970 | 10283 | 4 | 4 | 100.0000 | |