PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60601-60650 / 86044 show all | |||||||||||||||
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.9024 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | segdup | het | 99.5358 | 99.8337 | 99.2397 | 90.9955 | 12010 | 20 | 12008 | 92 | 3 | 3.2609 | |
| dgrover-gatk | SNP | ti | segdup | homalt | 99.9067 | 99.8534 | 99.9600 | 87.5169 | 7494 | 11 | 7494 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9073 | 99.8718 | 99.9429 | 60.7832 | 7010 | 9 | 7006 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.8905 | 99.9061 | 97.8953 | 39.6283 | 7445 | 7 | 7442 | 160 | 3 | 1.8750 | |
| dgrover-gatk | SNP | tv | map_l100_m0_e0 | homalt | 99.4517 | 99.0380 | 99.8689 | 62.1627 | 3809 | 37 | 3809 | 5 | 3 | 60.0000 | |
| dgrover-gatk | SNP | tv | map_l125_m0_e0 | homalt | 99.2760 | 98.7843 | 99.7726 | 69.4073 | 2194 | 27 | 2194 | 5 | 3 | 60.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | homalt | 98.8830 | 98.2477 | 99.5266 | 85.6901 | 841 | 15 | 841 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | homalt | 98.9259 | 98.2924 | 99.5676 | 86.6638 | 921 | 16 | 921 | 4 | 3 | 75.0000 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | homalt | 98.9362 | 98.3087 | 99.5717 | 86.7386 | 930 | 16 | 930 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.0387 | 84.9785 | 98.0296 | 74.3687 | 198 | 35 | 199 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m0_e0 | homalt | 98.2394 | 98.2394 | 98.2394 | 87.3609 | 279 | 5 | 279 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | * | map_l150_m0_e0 | homalt | 97.8593 | 97.5610 | 98.1595 | 90.6751 | 160 | 4 | 160 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | * | 96.0526 | 95.7377 | 96.3696 | 99.5069 | 292 | 13 | 292 | 11 | 3 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | * | 96.3636 | 96.0725 | 96.6565 | 99.5239 | 318 | 13 | 318 | 11 | 3 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e1 | * | 96.3855 | 96.0961 | 96.6767 | 99.5385 | 320 | 13 | 320 | 11 | 3 | 27.2727 | |
| egarrison-hhga | INDEL | D16_PLUS | HG002compoundhet | hetalt | 60.1689 | 43.1017 | 99.6134 | 31.8701 | 831 | 1097 | 773 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.4653 | 97.5659 | 99.3814 | 54.5880 | 481 | 12 | 482 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0758 | 99.2593 | 98.8930 | 58.8771 | 268 | 2 | 268 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7766 | 98.3740 | 99.1826 | 79.5429 | 363 | 6 | 364 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.1039 | 93.9086 | 98.4043 | 52.4051 | 185 | 12 | 185 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 77.1180 | 63.2035 | 98.8889 | 37.9310 | 292 | 170 | 267 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m0_e0 | het | 97.4705 | 97.8003 | 97.1429 | 84.6491 | 578 | 13 | 578 | 17 | 3 | 17.6471 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8809 | 97.7823 | 97.9798 | 88.1437 | 485 | 11 | 485 | 10 | 3 | 30.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m1_e0 | het | 98.0069 | 98.2094 | 97.8052 | 85.5214 | 713 | 13 | 713 | 16 | 3 | 18.7500 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e0 | het | 98.1058 | 98.2984 | 97.9140 | 86.2050 | 751 | 13 | 751 | 16 | 3 | 18.7500 | |
| egarrison-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.7071 | 96.5398 | 96.8750 | 91.2489 | 279 | 10 | 279 | 9 | 3 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9819 | 99.4169 | 98.5507 | 55.3109 | 341 | 2 | 340 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | * | 94.5007 | 93.1507 | 95.8904 | 90.7828 | 68 | 5 | 70 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | * | 95.1063 | 93.9024 | 96.3415 | 90.6712 | 77 | 5 | 79 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6528 | 92.9412 | 96.4286 | 90.6770 | 79 | 6 | 81 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 93.2945 | 89.8876 | 96.9697 | 75.5193 | 160 | 18 | 160 | 5 | 3 | 60.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.8079 | 86.9048 | 97.2973 | 76.0905 | 146 | 22 | 144 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6821 | 98.0105 | 99.3631 | 78.4932 | 936 | 19 | 936 | 6 | 3 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | * | 98.3425 | 98.3425 | 98.3425 | 85.3204 | 534 | 9 | 534 | 9 | 3 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | * | 98.8042 | 98.7304 | 98.8781 | 83.3892 | 1322 | 17 | 1322 | 15 | 3 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | * | 98.7934 | 98.7573 | 98.8296 | 84.6491 | 1351 | 17 | 1351 | 16 | 3 | 18.7500 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | * | 98.7451 | 98.7097 | 98.7805 | 84.7650 | 1377 | 18 | 1377 | 17 | 3 | 17.6471 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.9227 | 92.3913 | 95.5056 | 68.1004 | 85 | 7 | 85 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.5228 | 98.3122 | 98.7342 | 24.0385 | 233 | 4 | 234 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6125 | 99.4327 | 99.7930 | 57.8718 | 3856 | 22 | 3856 | 8 | 3 | 37.5000 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | het | 97.6415 | 96.2151 | 99.1108 | 92.9345 | 1449 | 57 | 1449 | 13 | 3 | 23.0769 | |
| egarrison-hhga | SNP | * | map_l250_m0_e0 | homalt | 99.1221 | 98.7281 | 99.5192 | 91.2532 | 621 | 8 | 621 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | ti | HG002complexvar | hetalt | 98.5507 | 98.5507 | 98.5507 | 42.1788 | 204 | 3 | 204 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6133 | 99.5263 | 99.7004 | 48.1016 | 3992 | 19 | 3993 | 12 | 3 | 25.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5483 | 99.3850 | 99.7121 | 48.3425 | 2424 | 15 | 2424 | 7 | 3 | 42.8571 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8183 | 99.8183 | 99.8183 | 42.3560 | 2197 | 4 | 2198 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.3034 | 71.2871 | 94.5946 | 91.5813 | 72 | 29 | 70 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.1345 | 68.1818 | 91.4894 | 92.2056 | 45 | 21 | 43 | 4 | 3 | 75.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | * | 98.2288 | 97.1533 | 99.3284 | 92.7300 | 1331 | 39 | 1331 | 9 | 3 | 33.3333 | |