PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59751-59800 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.0000 | 100.0000 | 78.5714 | 64.1026 | 1 | 0 | 11 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 66.0697 | 66.0377 | 66.1017 | 87.0756 | 35 | 18 | 78 | 40 | 3 | 7.5000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 61.0762 | 63.3333 | 58.9744 | 88.3582 | 19 | 11 | 46 | 32 | 3 | 9.3750 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 66.8790 | 66.0377 | 67.7419 | 87.6000 | 35 | 18 | 84 | 40 | 3 | 7.5000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 61.6216 | 63.3333 | 60.0000 | 88.9503 | 19 | 11 | 48 | 32 | 3 | 9.3750 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 66.6138 | 66.0377 | 67.2000 | 87.7089 | 35 | 18 | 84 | 41 | 3 | 7.3171 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 61.2286 | 63.3333 | 59.2593 | 88.9646 | 19 | 11 | 48 | 33 | 3 | 9.0909 | |
| qzeng-custom | SNP | * | func_cds | homalt | 99.8779 | 99.8281 | 99.9278 | 20.5349 | 6967 | 12 | 6918 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5632 | 99.4406 | 99.6861 | 52.5328 | 1600 | 9 | 1588 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6961 | 99.6184 | 97.7906 | 64.7616 | 3916 | 15 | 3895 | 88 | 3 | 3.4091 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8211 | 99.9112 | 99.7312 | 57.1511 | 2250 | 2 | 2226 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3011 | 99.7679 | 98.8387 | 65.0271 | 3869 | 9 | 3830 | 45 | 3 | 6.6667 | |
| qzeng-custom | SNP | ti | func_cds | homalt | 99.8860 | 99.8673 | 99.9047 | 18.9998 | 5268 | 7 | 5243 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7261 | 99.8636 | 99.5890 | 49.1643 | 1464 | 2 | 1454 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3861 | 99.7540 | 99.0208 | 56.4034 | 2433 | 6 | 2427 | 24 | 3 | 12.5000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4343 | 99.0271 | 99.8449 | 39.8008 | 3868 | 38 | 3863 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3268 | 99.3263 | 97.3471 | 64.9445 | 1327 | 9 | 1321 | 36 | 3 | 8.3333 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.1050 | 99.5095 | 94.8139 | 49.1046 | 4666 | 23 | 4662 | 255 | 3 | 1.1765 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3614 | 99.3623 | 99.3605 | 44.2283 | 3428 | 22 | 3418 | 22 | 3 | 13.6364 | |
| qzeng-custom | SNP | tv | map_l250_m0_e0 | homalt | 71.8954 | 56.9948 | 97.3451 | 95.8148 | 110 | 83 | 110 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.8485 | 84.9895 | 99.9117 | 39.0086 | 3250 | 574 | 3393 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1781 | 98.5667 | 99.7971 | 74.2130 | 2957 | 43 | 2951 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.8428 | 92.0372 | 99.9767 | 29.6938 | 12668 | 1096 | 12856 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.8057 | 91.9684 | 99.9771 | 32.4064 | 12905 | 1127 | 13098 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9303 | 100.0000 | 99.8608 | 45.9493 | 2152 | 0 | 2152 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 52.3810 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | * | 96.9865 | 96.5986 | 97.3774 | 87.3376 | 852 | 30 | 854 | 23 | 3 | 13.0435 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | homalt | 98.0600 | 97.8873 | 98.2332 | 86.1002 | 278 | 6 | 278 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | het | 97.3655 | 96.7790 | 97.9592 | 85.1598 | 1292 | 43 | 1296 | 27 | 3 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | homalt | 98.6977 | 98.3607 | 99.0371 | 84.0640 | 720 | 12 | 720 | 7 | 3 | 42.8571 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | het | 97.3979 | 96.7649 | 98.0392 | 86.1441 | 1346 | 45 | 1350 | 27 | 3 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e0 | homalt | 98.6859 | 98.4273 | 98.9460 | 85.1526 | 751 | 12 | 751 | 8 | 3 | 37.5000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | het | 97.4295 | 96.8040 | 98.0631 | 86.2674 | 1363 | 45 | 1367 | 27 | 3 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l125_m2_e1 | homalt | 98.7047 | 98.4496 | 98.9610 | 85.2744 | 762 | 12 | 762 | 8 | 3 | 37.5000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | homalt | 98.1595 | 97.5610 | 98.7654 | 88.0266 | 480 | 12 | 480 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | homalt | 98.1707 | 98.1707 | 98.1707 | 90.1855 | 161 | 3 | 161 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | * | 96.0526 | 95.7377 | 96.3696 | 99.5373 | 292 | 13 | 292 | 11 | 3 | 27.2727 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | * | 96.3636 | 96.0725 | 96.6565 | 99.5517 | 318 | 13 | 318 | 11 | 3 | 27.2727 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | * | 96.3855 | 96.0961 | 96.6767 | 99.5648 | 320 | 13 | 320 | 11 | 3 | 27.2727 | |
| ndellapenna-hhga | INDEL | D16_PLUS | HG002compoundhet | hetalt | 63.9739 | 47.1473 | 99.4764 | 32.8056 | 909 | 1019 | 760 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 66.2973 | 49.9283 | 98.6348 | 46.2385 | 348 | 349 | 289 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.8529 | 96.7213 | 95.0000 | 65.6652 | 59 | 2 | 76 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.6387 | 98.1030 | 99.1803 | 79.0977 | 362 | 7 | 363 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 78.4355 | 65.1515 | 98.5240 | 37.7011 | 301 | 161 | 267 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.5157 | 95.8478 | 97.1930 | 90.6741 | 277 | 12 | 277 | 8 | 3 | 37.5000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3931 | 96.8880 | 97.9036 | 87.3876 | 467 | 15 | 467 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5562 | 97.0817 | 98.0354 | 87.9212 | 499 | 15 | 499 | 10 | 3 | 30.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4952 | 96.9349 | 98.0620 | 87.9355 | 506 | 16 | 506 | 10 | 3 | 30.0000 | |