PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59651-59700 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1764 | 99.1423 | 99.2106 | 64.9939 | 3121 | 27 | 3142 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8244 | 99.7128 | 99.9361 | 40.9541 | 6250 | 18 | 6259 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7907 | 99.6802 | 99.9015 | 41.5683 | 4052 | 13 | 4057 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.7395 | 74.2574 | 88.4615 | 92.0408 | 75 | 26 | 69 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m0_e0 | * | 95.0820 | 91.0219 | 99.5211 | 84.7102 | 1247 | 123 | 1247 | 6 | 3 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m0_e0 | homalt | 99.4273 | 99.5413 | 99.3135 | 89.5279 | 434 | 2 | 434 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m1_e0 | homalt | 99.6259 | 99.4400 | 99.8126 | 84.3683 | 1598 | 9 | 1598 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e0 | homalt | 99.6564 | 99.4854 | 99.8279 | 85.6390 | 1740 | 9 | 1740 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m2_e1 | homalt | 99.6608 | 99.4921 | 99.8301 | 85.6923 | 1763 | 9 | 1763 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6381 | 99.7391 | 99.5373 | 34.1584 | 3441 | 9 | 3442 | 16 | 3 | 18.7500 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7125 | 99.9446 | 58.6136 | 9017 | 26 | 9016 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | homalt | 99.8261 | 99.7070 | 99.9456 | 61.2864 | 9187 | 27 | 9186 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8278 | 99.7097 | 99.9461 | 61.3020 | 9275 | 27 | 9274 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7778 | 99.6246 | 99.9315 | 63.2977 | 5838 | 22 | 5839 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7836 | 99.6344 | 99.9333 | 66.1132 | 5995 | 22 | 5996 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6378 | 99.9340 | 66.1624 | 6052 | 22 | 6058 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | * | func_cds | * | 98.6486 | 98.4270 | 98.8713 | 35.8900 | 438 | 7 | 438 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.6757 | 82.3529 | 70.0000 | 99.3709 | 14 | 3 | 14 | 6 | 3 | 50.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 47.0332 | 30.8307 | 99.1285 | 43.6118 | 386 | 866 | 455 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.9377 | 87.2897 | 99.3671 | 71.9361 | 467 | 68 | 471 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | * | 94.6667 | 93.4211 | 95.9459 | 50.0000 | 71 | 5 | 71 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.4444 | 56.8182 | 89.2857 | 94.6463 | 25 | 19 | 25 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | * | 60.0000 | 77.7778 | 48.8372 | 93.2602 | 21 | 6 | 21 | 22 | 3 | 13.6364 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 36.3636 | 100.0000 | 22.2222 | 94.4785 | 4 | 0 | 4 | 14 | 3 | 21.4286 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | * | 56.7568 | 77.7778 | 44.6809 | 93.7831 | 21 | 6 | 21 | 26 | 3 | 11.5385 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 32.0000 | 100.0000 | 19.0476 | 94.5170 | 4 | 0 | 4 | 17 | 3 | 17.6471 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | * | 55.2632 | 75.0000 | 43.7500 | 93.7662 | 21 | 7 | 21 | 27 | 3 | 11.1111 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 32.0000 | 100.0000 | 19.0476 | 94.6292 | 4 | 0 | 4 | 17 | 3 | 17.6471 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 81.4815 | 84.6154 | 78.5714 | 67.4419 | 11 | 2 | 11 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.7273 | 100.0000 | 57.1429 | 84.7826 | 4 | 0 | 4 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0973 | 97.0711 | 99.1453 | 74.0433 | 464 | 14 | 464 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5161 | 92.6267 | 98.5915 | 44.5312 | 201 | 16 | 210 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.6645 | 97.8723 | 97.4576 | 62.7466 | 460 | 10 | 460 | 12 | 3 | 25.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | * | 98.6318 | 98.2079 | 99.0593 | 84.2255 | 1370 | 25 | 1369 | 13 | 3 | 23.0769 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.0741 | 99.0741 | 99.0741 | 82.5186 | 535 | 5 | 535 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.3630 | 92.5926 | 96.2025 | 76.1329 | 75 | 6 | 76 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.6667 | 91.6667 | 91.6667 | 72.7273 | 33 | 3 | 33 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.7374 | 90.2174 | 95.4023 | 68.7050 | 83 | 9 | 83 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.0220 | 94.6281 | 97.4576 | 65.7475 | 229 | 13 | 230 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.7213 | 96.7213 | 96.7213 | 67.4667 | 118 | 4 | 118 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 3 | 3 | 100.0000 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_siren | het | 95.0101 | 93.0070 | 97.1014 | 84.4419 | 133 | 10 | 134 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3760 | 99.2368 | 99.5156 | 55.1976 | 3901 | 30 | 3903 | 19 | 3 | 15.7895 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4251 | 70.6294 | 96.1165 | 91.5574 | 101 | 42 | 99 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.5193 | 68.6275 | 94.5205 | 91.5704 | 70 | 32 | 69 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8356 | 99.8174 | 99.8539 | 32.2109 | 2733 | 5 | 2734 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | map_l250_m0_e0 | homalt | 98.9608 | 98.4102 | 99.5177 | 90.5327 | 619 | 10 | 619 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | HG002complexvar | hetalt | 98.3051 | 98.0676 | 98.5437 | 41.1429 | 203 | 4 | 203 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7270 | 99.6589 | 99.7951 | 46.6278 | 1461 | 5 | 1461 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5689 | 99.4260 | 99.7122 | 48.3103 | 2425 | 14 | 2425 | 7 | 3 | 42.8571 | |