PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59601-59650 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.2592 | 98.0695 | 98.4496 | 56.8562 | 254 | 5 | 254 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3017 | 99.1632 | 99.4406 | 55.8914 | 711 | 6 | 711 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6688 | 93.6820 | 99.8523 | 38.6219 | 1809 | 122 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6301 | 97.6017 | 99.6805 | 67.8645 | 936 | 23 | 936 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7867 | 99.6017 | 99.9723 | 54.3769 | 25258 | 101 | 25260 | 7 | 3 | 42.8571 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2959 | 98.6897 | 99.9096 | 50.3888 | 6628 | 88 | 6630 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3163 | 97.0393 | 99.6273 | 57.4974 | 1606 | 49 | 1604 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.9799 | 94.9254 | 99.1254 | 69.6996 | 318 | 17 | 340 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | * | hetalt | 96.6998 | 93.7403 | 99.8523 | 39.1187 | 1812 | 121 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.5553 | 93.9271 | 99.3348 | 48.1609 | 232 | 15 | 448 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5761 | 89.9487 | 99.7053 | 41.1561 | 877 | 98 | 1015 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6711 | 99.6711 | 99.6711 | 66.8845 | 909 | 3 | 909 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6963 | 93.7338 | 99.8521 | 39.0808 | 1810 | 121 | 2025 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6963 | 93.7338 | 99.8521 | 39.0808 | 1810 | 121 | 2025 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4161 | 97.1846 | 99.6791 | 68.7813 | 932 | 27 | 932 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.3978 | 91.9540 | 85.1064 | 93.2713 | 80 | 7 | 80 | 14 | 3 | 21.4286 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.7014 | 95.6522 | 82.6923 | 94.6776 | 44 | 2 | 43 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 88.2979 | 92.2222 | 84.6939 | 93.9840 | 83 | 7 | 83 | 15 | 3 | 20.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 95.2590 | 46 | 2 | 44 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 88.5572 | 91.7526 | 85.5769 | 93.7799 | 89 | 8 | 89 | 15 | 3 | 20.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 95.1199 | 49 | 2 | 47 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2060 | 98.6004 | 99.8192 | 50.8699 | 6622 | 94 | 6624 | 12 | 3 | 25.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.2535 | 93.7662 | 98.8764 | 76.3769 | 361 | 24 | 352 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0476 | 98.8413 | 97.2665 | 85.1010 | 853 | 10 | 854 | 24 | 3 | 12.5000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.6181 | 98.9919 | 96.2818 | 88.4650 | 491 | 5 | 492 | 19 | 3 | 15.7895 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9354 | 99.0237 | 96.8707 | 88.7477 | 710 | 7 | 712 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0583 | 99.0826 | 97.0551 | 89.2528 | 756 | 7 | 758 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | INDEL | D6_15 | * | hetalt | 96.9508 | 94.1277 | 99.9483 | 34.1160 | 7694 | 480 | 7740 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9125 | 94.0563 | 99.9476 | 30.4494 | 7580 | 479 | 7625 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8473 | 98.1095 | 99.5964 | 63.8980 | 986 | 19 | 987 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9125 | 94.0563 | 99.9476 | 30.4494 | 7580 | 479 | 7625 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.6649 | 94.3284 | 99.1202 | 69.9029 | 316 | 19 | 338 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.6170 | 100.0000 | 88.0000 | 87.0466 | 22 | 0 | 22 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.1381 | 98.5714 | 99.7113 | 61.0570 | 1035 | 15 | 1036 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.6285 | 99.0792 | 98.1818 | 85.0543 | 538 | 5 | 540 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0099 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | * | hetalt | 96.6097 | 93.4744 | 99.9627 | 39.2455 | 7993 | 558 | 8033 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.3517 | 93.1174 | 97.6959 | 79.6053 | 230 | 17 | 212 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.7100 | 92.6174 | 96.8992 | 76.3736 | 138 | 11 | 125 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | homalt | 97.8022 | 98.8889 | 96.7391 | 84.1105 | 89 | 1 | 89 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | * | HG002compoundhet | het | 95.9129 | 92.2768 | 99.8474 | 42.7742 | 13083 | 1095 | 13083 | 20 | 3 | 15.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.3952 | 89.8785 | 99.3897 | 87.2026 | 2442 | 275 | 2443 | 15 | 3 | 20.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.4916 | 85.0340 | 99.0106 | 87.6728 | 1500 | 264 | 1501 | 15 | 3 | 20.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.8673 | 90.5405 | 99.6283 | 86.5685 | 2144 | 224 | 2144 | 8 | 3 | 37.5000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.0184 | 85.6671 | 99.3870 | 87.2881 | 1297 | 217 | 1297 | 8 | 3 | 37.5000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1998 | 96.7133 | 99.7327 | 79.6799 | 10446 | 355 | 10447 | 28 | 3 | 10.7143 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2945 | 95.0894 | 99.6044 | 78.8532 | 6545 | 338 | 6546 | 26 | 3 | 11.5385 | |
| ltrigg-rtg2 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 37.5000 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.4206 | 97.7525 | 97.0909 | 66.2577 | 3175 | 73 | 3204 | 96 | 3 | 3.1250 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2450 | 99.0076 | 99.4836 | 62.5686 | 4789 | 48 | 4816 | 25 | 3 | 12.0000 | |