PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59501-59550 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.3785 | 91.3011 | 99.8371 | 36.7431 | 2414 | 230 | 2451 | 4 | 3 | 75.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | homalt | 96.7391 | 98.8889 | 94.6809 | 84.1484 | 89 | 1 | 89 | 5 | 3 | 60.0000 | |
| jlack-gatk | SNP | * | HG002complexvar | hetalt | 99.0323 | 99.0323 | 99.0323 | 39.5712 | 307 | 3 | 307 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8871 | 98.1073 | 99.6795 | 84.5007 | 933 | 18 | 933 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.2339 | 98.8263 | 99.6450 | 83.3103 | 842 | 10 | 842 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6954 | 99.4790 | 99.9128 | 62.0351 | 3437 | 18 | 3437 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7791 | 99.8466 | 99.7116 | 58.4535 | 11067 | 17 | 11063 | 32 | 3 | 9.3750 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9333 | 99.9259 | 99.9407 | 34.6955 | 6740 | 5 | 6740 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2029 | 90.9091 | 97.7444 | 92.5113 | 130 | 13 | 130 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4724 | 92.1569 | 96.9072 | 92.3682 | 94 | 8 | 94 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2883 | 99.8050 | 98.7768 | 40.6294 | 4607 | 9 | 4603 | 57 | 3 | 5.2632 | |
| jlack-gatk | SNP | * | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 84.6154 | 39 | 2 | 39 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.0841 | 40 | 2 | 40 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | * | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8950 | 99.4444 | 98.3516 | 88.4426 | 716 | 4 | 716 | 12 | 3 | 25.0000 | |
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6683 | 99.4621 | 99.8754 | 72.2887 | 2404 | 13 | 2404 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.8883 | 99.7292 | 46.8642 | 6261 | 7 | 6261 | 17 | 3 | 17.6471 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 100.0000 | 99.8639 | 41.8470 | 2201 | 0 | 2201 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.5569 | 99.7479 | 97.3939 | 48.1612 | 6727 | 17 | 6727 | 180 | 3 | 1.6667 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.7835 | 89.1089 | 96.7742 | 93.3045 | 90 | 11 | 90 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0233 | 90.9091 | 95.2381 | 93.5252 | 60 | 6 | 60 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6292 | 99.7696 | 99.4893 | 34.4273 | 3897 | 9 | 3896 | 20 | 3 | 15.0000 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 93.3333 | 96.5517 | 90.3226 | 82.1839 | 28 | 1 | 28 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 93.5484 | 96.6667 | 90.6250 | 83.5897 | 29 | 1 | 29 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 93.7500 | 96.7742 | 90.9091 | 83.1633 | 30 | 1 | 30 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | ti | map_l250_m1_e0 | homalt | 98.5516 | 97.3864 | 99.7451 | 85.8112 | 1565 | 42 | 1565 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e0 | homalt | 98.6412 | 97.5415 | 99.7661 | 86.8218 | 1706 | 43 | 1706 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | ti | map_l250_m2_e1 | homalt | 98.6012 | 97.4605 | 99.7689 | 86.8645 | 1727 | 45 | 1727 | 4 | 3 | 75.0000 | |
| jlack-gatk | SNP | tv | HG002complexvar | hetalt | 99.0323 | 99.0323 | 99.0323 | 39.5712 | 307 | 3 | 307 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8006 | 99.8575 | 99.7437 | 62.4217 | 7009 | 10 | 7005 | 18 | 3 | 16.6667 | |
| jlack-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 84.6154 | 39 | 2 | 39 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.0841 | 40 | 2 | 40 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 85.8065 | 41 | 2 | 41 | 3 | 3 | 100.0000 | |
| jlack-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.1429 | 96.8912 | 97.3958 | 93.0207 | 187 | 6 | 187 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4480 | 99.1333 | 99.7647 | 74.0763 | 2974 | 26 | 2968 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7085 | 99.7349 | 99.6820 | 71.4048 | 1881 | 5 | 1881 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6822 | 99.5584 | 99.8063 | 74.0988 | 3607 | 16 | 3607 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 93.0441 | 87.4766 | 99.3684 | 70.7692 | 468 | 67 | 472 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9303 | 100.0000 | 99.8608 | 46.0035 | 2152 | 0 | 2152 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 90.1610 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | homalt | 98.9177 | 98.9177 | 98.9177 | 87.2411 | 457 | 5 | 457 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | * | map_l150_m2_e0 | homalt | 98.9605 | 98.9605 | 98.9605 | 88.3873 | 476 | 5 | 476 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3761 | 98.8412 | 99.9168 | 52.9178 | 27635 | 324 | 27634 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0802 | 98.5775 | 99.5880 | 67.8801 | 30700 | 443 | 30701 | 127 | 3 | 2.3622 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8700 | 99.7836 | 99.9566 | 69.9578 | 11527 | 25 | 11527 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0802 | 98.5775 | 99.5880 | 67.8801 | 30700 | 443 | 30701 | 127 | 3 | 2.3622 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8700 | 99.7836 | 99.9566 | 69.9578 | 11527 | 25 | 11527 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | ti | map_l250_m0_e0 | het | 97.6596 | 98.2869 | 97.0402 | 94.0240 | 918 | 16 | 918 | 28 | 3 | 10.7143 | |
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9455 | 99.9208 | 99.9703 | 62.5348 | 10089 | 8 | 10089 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8432 | 99.7787 | 99.9077 | 76.2675 | 5411 | 12 | 5411 | 5 | 3 | 60.0000 | |