PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59351-59400 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7764 | 99.6650 | 99.8881 | 47.1210 | 6247 | 21 | 6247 | 7 | 3 | 42.8571 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.5264 | 98.3425 | 98.7109 | 83.7230 | 534 | 9 | 536 | 7 | 3 | 42.8571 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8124 | 100.0000 | 97.6526 | 79.2398 | 208 | 0 | 208 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | * | hetalt | 96.4031 | 93.0885 | 99.9625 | 39.0201 | 7960 | 591 | 8000 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | * | 96.4706 | 94.0984 | 98.9655 | 83.1395 | 287 | 18 | 287 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | * | * | hetalt | 99.7131 | 99.7704 | 99.6560 | 48.7962 | 869 | 2 | 869 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5502 | 99.2026 | 99.9003 | 37.1632 | 18038 | 145 | 18035 | 18 | 3 | 16.6667 | |
| hfeng-pmm1 | SNP | ti | * | hetalt | 99.5708 | 99.6564 | 99.4854 | 47.7130 | 580 | 2 | 580 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.4265 | 98.9020 | 99.9566 | 52.6521 | 27652 | 307 | 27651 | 12 | 3 | 25.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.2247 | 98.6289 | 99.8277 | 67.0916 | 30716 | 427 | 30716 | 53 | 3 | 5.6604 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.9134 | 99.8615 | 99.9653 | 69.5900 | 11536 | 16 | 11536 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.2247 | 98.6289 | 99.8277 | 67.0916 | 30716 | 427 | 30716 | 53 | 3 | 5.6604 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.9134 | 99.8615 | 99.9653 | 69.5900 | 11536 | 16 | 11536 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | SNP | ti | map_l250_m0_e0 | het | 97.9133 | 97.9657 | 97.8610 | 93.2569 | 915 | 19 | 915 | 20 | 3 | 15.0000 | |
| hfeng-pmm1 | SNP | tv | * | hetalt | 99.7131 | 99.7704 | 99.6560 | 48.7962 | 869 | 2 | 869 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4544 | 99.0741 | 99.8377 | 37.0787 | 7383 | 69 | 7380 | 12 | 3 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | het | 98.7997 | 98.4523 | 99.1495 | 80.8249 | 2799 | 44 | 2798 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.2644 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | homalt | 98.4615 | 99.4819 | 97.4619 | 93.5494 | 192 | 1 | 192 | 5 | 3 | 60.0000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e0 | het | 98.1856 | 97.6289 | 98.7487 | 88.3106 | 1894 | 46 | 1894 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | SNP | tv | map_l250_m2_e1 | het | 98.2088 | 97.6590 | 98.7648 | 88.3806 | 1919 | 46 | 1919 | 24 | 3 | 12.5000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8168 | 95.7514 | 99.9731 | 60.5697 | 14762 | 655 | 14877 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0102 | 98.4000 | 99.6280 | 74.9024 | 2952 | 48 | 2946 | 11 | 3 | 27.2727 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.9325 | 86.8895 | 99.8788 | 38.1155 | 2366 | 357 | 2473 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6178 | 95.3805 | 99.9625 | 30.9240 | 10592 | 513 | 10671 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6612 | 95.4654 | 99.9603 | 33.6622 | 10000 | 475 | 10082 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2444 | 98.7425 | 99.7514 | 50.7816 | 3612 | 46 | 3612 | 9 | 3 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 52.3810 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | het | 97.3349 | 98.2370 | 96.4491 | 87.4337 | 1003 | 18 | 1005 | 37 | 3 | 8.1081 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | het | 97.7323 | 98.2772 | 97.1935 | 88.0494 | 1312 | 23 | 1316 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e0 | het | 97.7864 | 98.2746 | 97.3031 | 88.7801 | 1367 | 24 | 1371 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | * | map_l125_m2_e1 | het | 97.8130 | 98.2955 | 97.3352 | 88.8707 | 1384 | 24 | 1388 | 38 | 3 | 7.8947 | |
| hfeng-pmm2 | INDEL | * | map_l150_m0_e0 | homalt | 98.7879 | 99.3902 | 98.1928 | 89.9819 | 163 | 1 | 163 | 3 | 3 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | het | 97.3465 | 98.3626 | 96.3512 | 90.4715 | 841 | 14 | 845 | 32 | 3 | 9.3750 | |
| hfeng-pmm2 | INDEL | * | map_l150_m1_e0 | homalt | 99.0270 | 99.1342 | 98.9201 | 87.1816 | 458 | 4 | 458 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | het | 97.4409 | 98.4547 | 96.4478 | 90.9902 | 892 | 14 | 896 | 33 | 3 | 9.0909 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | homalt | 99.0654 | 99.1684 | 98.9627 | 88.3152 | 477 | 4 | 477 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | het | 97.3802 | 98.2684 | 96.5079 | 91.0427 | 908 | 16 | 912 | 33 | 3 | 9.0909 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6820 | 95.7792 | 99.6619 | 56.9975 | 1180 | 52 | 1179 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | * | 99.0792 | 98.9177 | 99.2412 | 80.6907 | 1828 | 20 | 1831 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | * | 99.0853 | 98.9034 | 99.2678 | 81.4098 | 1894 | 21 | 1898 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | * | 99.0966 | 98.9170 | 99.2769 | 81.5232 | 1918 | 21 | 1922 | 14 | 3 | 21.4286 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.9456 | 99.0809 | 98.8106 | 83.8505 | 1078 | 10 | 1080 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.9520 | 99.0376 | 98.8666 | 84.6288 | 1132 | 11 | 1134 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.9647 | 99.0493 | 98.8803 | 84.7056 | 1146 | 11 | 1148 | 13 | 3 | 23.0769 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.6799 | 98.8842 | 98.4765 | 86.4946 | 709 | 8 | 711 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.6930 | 98.8204 | 98.5658 | 87.1803 | 754 | 9 | 756 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.6531 | 98.7147 | 98.5915 | 87.1946 | 768 | 10 | 770 | 11 | 3 | 27.2727 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | homalt | 99.6576 | 99.5719 | 99.7434 | 77.6311 | 1163 | 5 | 1166 | 3 | 3 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.2643 | 90.4306 | 98.4375 | 74.6367 | 189 | 20 | 189 | 3 | 3 | 100.0000 | |