PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59251-59300 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | map_l250_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 98.3513 | 49 | 4 | 49 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | het | 92.6606 | 90.9910 | 94.3925 | 96.3680 | 101 | 10 | 101 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | het | 93.2773 | 91.7355 | 94.8718 | 96.5022 | 111 | 10 | 111 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 93.3333 | 91.8033 | 94.9153 | 96.5547 | 112 | 10 | 112 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 88.2468 | 79.8834 | 98.5663 | 50.7937 | 274 | 69 | 275 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.8651 | 96.6463 | 99.1150 | 36.8715 | 317 | 11 | 336 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5335 | 93.9024 | 97.2222 | 86.5672 | 154 | 10 | 105 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3908 | 98.3908 | 98.3908 | 65.9891 | 428 | 7 | 428 | 7 | 3 | 42.8571 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6106 | 99.5460 | 99.6753 | 76.5566 | 1535 | 7 | 1535 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.1908 | 91.4842 | 99.2105 | 70.2428 | 376 | 35 | 377 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5421 | 97.3208 | 99.7944 | 32.2970 | 1453 | 40 | 1456 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m0_e0 | het | 98.1450 | 98.4772 | 97.8151 | 83.8007 | 582 | 9 | 582 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3232 | 99.1554 | 99.4915 | 81.9902 | 587 | 5 | 587 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 82.7381 | 606 | 5 | 606 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3538 | 99.1935 | 99.5146 | 82.8286 | 615 | 5 | 615 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9839 | 97.9839 | 97.9839 | 87.4399 | 486 | 10 | 486 | 10 | 3 | 30.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | het | 98.4902 | 98.7603 | 98.2216 | 85.1332 | 717 | 9 | 718 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | het | 98.5651 | 98.8220 | 98.3095 | 85.7566 | 755 | 9 | 756 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | het | 98.5762 | 98.8312 | 98.3226 | 85.8499 | 761 | 9 | 762 | 13 | 3 | 23.0769 | |
| jli-custom | INDEL | D1_5 | map_l150_m1_e0 | het | 98.2480 | 98.7552 | 97.7459 | 87.7633 | 476 | 6 | 477 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 98.3564 | 98.8327 | 97.8846 | 88.2671 | 508 | 6 | 509 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_l150_m2_e1 | het | 98.2844 | 98.6590 | 97.9127 | 88.3097 | 515 | 7 | 516 | 11 | 3 | 27.2727 | |
| jli-custom | INDEL | D1_5 | map_siren | het | 99.2764 | 99.3412 | 99.2116 | 78.6894 | 2262 | 15 | 2265 | 18 | 3 | 16.6667 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9027 | 83.6009 | 99.6021 | 25.4941 | 729 | 143 | 751 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2109 | 98.7915 | 99.6339 | 57.3510 | 1635 | 20 | 1633 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7080 | 99.4792 | 97.9487 | 44.6023 | 191 | 1 | 191 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdup | homalt | 97.0874 | 100.0000 | 94.3396 | 91.8210 | 50 | 0 | 50 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.1243 | 90.5963 | 97.9381 | 81.4176 | 395 | 41 | 380 | 8 | 3 | 37.5000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 96.7731 | 93.7729 | 99.9716 | 58.2211 | 10481 | 696 | 10542 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0633 | 94.3415 | 99.9468 | 62.9123 | 5602 | 336 | 5641 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 100.0000 | 33.3333 | 94.8718 | 1 | 0 | 2 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 98.9891 | 99.0792 | 98.8991 | 83.0903 | 538 | 5 | 539 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0514 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | * | 99.2513 | 98.9544 | 99.5499 | 81.4397 | 1325 | 14 | 1327 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.6154 | 100.0000 | 99.2337 | 79.2939 | 518 | 0 | 518 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 99.2302 | 98.9035 | 99.5591 | 82.7700 | 1353 | 15 | 1355 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.6248 | 100.0000 | 99.2523 | 80.8106 | 531 | 0 | 531 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | * | 99.2452 | 98.9247 | 99.5677 | 82.8600 | 1380 | 15 | 1382 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.6310 | 100.0000 | 99.2647 | 80.8922 | 540 | 0 | 540 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I1_5 | map_siren | homalt | 99.6709 | 99.8350 | 99.5074 | 76.9711 | 1210 | 2 | 1212 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 97.1767 | 94.5414 | 99.9630 | 28.7734 | 8071 | 466 | 8109 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.5816 | 87.6404 | 98.1132 | 68.5149 | 156 | 22 | 156 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 65.1786 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3918 | 97.7459 | 97.0402 | 80.3978 | 477 | 11 | 459 | 14 | 3 | 21.4286 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 81.2500 | 0 | 0 | 0 | 3 | 3 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1944 | 96.7449 | 99.6880 | 59.3016 | 1278 | 43 | 1278 | 4 | 3 | 75.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3103 | 100.0000 | 98.6301 | 65.2381 | 216 | 0 | 216 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 64.1379 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |