PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58801-58850 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 94.1710 | 93.6508 | 94.6970 | 88.3082 | 118 | 8 | 125 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 94.2808 | 94.1176 | 94.4444 | 90.3330 | 80 | 5 | 85 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.5926 | 100.0000 | 86.2069 | 89.1386 | 25 | 0 | 25 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.3333 | 100.0000 | 20.0000 | 89.3617 | 1 | 0 | 1 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.1271 | 93.6170 | 94.6429 | 77.7778 | 44 | 3 | 53 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 73.3791 | 60.6557 | 92.8571 | 56.2500 | 37 | 24 | 39 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 54.4803 | 41.3043 | 80.0000 | 88.4793 | 19 | 27 | 20 | 5 | 3 | 60.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 55.8807 | 43.1373 | 79.3103 | 88.0165 | 22 | 29 | 23 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 66.2865 | 65.2174 | 67.3913 | 98.3922 | 30 | 16 | 31 | 15 | 3 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | * | 70.0000 | 73.6842 | 66.6667 | 41.6667 | 14 | 5 | 14 | 7 | 3 | 42.8571 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 33.3333 | 33.3333 | 33.3333 | 97.4576 | 2 | 4 | 2 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 55.1724 | 50.0000 | 61.5385 | 96.2590 | 16 | 16 | 16 | 10 | 3 | 30.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | homalt | 70.5882 | 85.7143 | 60.0000 | 94.7368 | 6 | 1 | 6 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 51.9481 | 51.2821 | 52.6316 | 95.3827 | 20 | 19 | 20 | 18 | 3 | 16.6667 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | * | 68.7500 | 64.7059 | 73.3333 | 53.1250 | 11 | 6 | 11 | 4 | 3 | 75.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 28.8000 | 20.0000 | 51.4286 | 92.7835 | 19 | 76 | 18 | 17 | 3 | 17.6471 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 41.9948 | 28.0702 | 83.3333 | 91.1330 | 32 | 82 | 30 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | func_cds | homalt | 61.5385 | 53.3333 | 72.7273 | 21.4286 | 8 | 7 | 8 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | het | 70.0000 | 60.0000 | 84.0000 | 86.8421 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | het | 70.0000 | 60.0000 | 84.0000 | 87.9808 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | het | 71.6724 | 62.5000 | 84.0000 | 88.4259 | 10 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4629 | 99.5028 | 99.4231 | 53.9823 | 1601 | 8 | 1551 | 9 | 3 | 33.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0149 | 100.0000 | 94.2029 | 85.9470 | 2 | 0 | 65 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.7778 | 100.0000 | 95.6522 | 89.5810 | 3 | 0 | 88 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6996 | 99.6713 | 99.7279 | 30.4782 | 2729 | 9 | 2566 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 90.4762 | 100.0000 | 82.6087 | 90.4959 | 1 | 0 | 19 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.4444 | 100.0000 | 89.4737 | 92.8972 | 2 | 0 | 34 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | homalt | 99.8314 | 99.7996 | 99.8632 | 71.9880 | 4482 | 9 | 4379 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | homalt | 99.8168 | 99.8189 | 99.8146 | 77.6220 | 2756 | 5 | 2692 | 5 | 3 | 60.0000 | |
| eyeh-varpipe | SNP | ti | segdup | het | 97.9291 | 99.8421 | 96.0882 | 90.6738 | 12011 | 19 | 11815 | 481 | 3 | 0.6237 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.4222 | 100.0000 | 84.1998 | 71.2990 | 855 | 0 | 826 | 155 | 3 | 1.9355 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.6922 | 99.9080 | 91.8178 | 68.6059 | 2172 | 2 | 2076 | 185 | 3 | 1.6216 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5518 | 100.0000 | 87.8849 | 70.8431 | 1387 | 0 | 1313 | 181 | 3 | 1.6575 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7927 | 99.7427 | 99.8427 | 56.7264 | 3877 | 10 | 3809 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | homalt | 99.7129 | 99.7140 | 99.7118 | 68.3997 | 3835 | 11 | 3806 | 11 | 3 | 27.2727 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | homalt | 99.7710 | 99.7212 | 99.8208 | 74.4574 | 3935 | 11 | 3900 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | homalt | 99.7787 | 99.7306 | 99.8269 | 76.3785 | 4072 | 11 | 4037 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | homalt | 99.7814 | 99.7339 | 99.8289 | 76.4129 | 4123 | 11 | 4083 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | * | 97.7391 | 99.2157 | 96.3057 | 94.5189 | 759 | 6 | 756 | 29 | 3 | 10.3448 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.2459 | 57.4713 | 90.3226 | 99.9104 | 50 | 37 | 56 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | het | 96.1685 | 94.7443 | 97.6361 | 86.4189 | 1334 | 74 | 1363 | 33 | 3 | 9.0909 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | * | 96.0765 | 95.1362 | 97.0356 | 91.6003 | 489 | 25 | 491 | 15 | 3 | 20.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 92.3823 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | * | 95.5075 | 94.0984 | 96.9595 | 95.4215 | 287 | 18 | 287 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | homalt | 97.7376 | 99.0826 | 96.4286 | 95.4155 | 108 | 1 | 108 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | * | 95.8652 | 94.5619 | 97.2050 | 95.6651 | 313 | 18 | 313 | 9 | 3 | 33.3333 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | homalt | 97.8541 | 99.1304 | 96.6102 | 95.7812 | 114 | 1 | 114 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | * | 95.8904 | 94.5946 | 97.2222 | 95.7558 | 315 | 18 | 315 | 9 | 3 | 33.3333 | |