PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58701-58750 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8252 | 99.7776 | 99.8728 | 71.9221 | 3141 | 7 | 3141 | 4 | 3 | 75.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7923 | 99.6650 | 99.9200 | 46.9810 | 6247 | 21 | 6247 | 5 | 3 | 60.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 91.0891 | 96.8421 | 93.5680 | 92 | 9 | 92 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.7500 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7823 | 99.7440 | 99.8206 | 33.3561 | 3896 | 10 | 3895 | 7 | 3 | 42.8571 | |
| ckim-gatk | SNP | ti | segdup | homalt | 99.4711 | 98.9873 | 99.9596 | 87.8310 | 7429 | 76 | 7429 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7369 | 99.5048 | 99.9701 | 61.6836 | 10047 | 50 | 10047 | 3 | 3 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8503 | 99.8005 | 99.9001 | 62.4759 | 7005 | 14 | 7001 | 7 | 3 | 42.8571 | |
| ckim-gatk | SNP | tv | map_siren | homalt | 89.2983 | 80.6845 | 99.9712 | 58.8566 | 13910 | 3330 | 13907 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.3273 | 88.3962 | 98.8411 | 66.0101 | 1196 | 157 | 1194 | 14 | 3 | 21.4286 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | hetalt | 75.4294 | 62.0968 | 96.0526 | 85.1852 | 77 | 47 | 73 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | homalt | 77.1685 | 63.0807 | 99.3582 | 75.2463 | 774 | 453 | 774 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | hetalt | 75.0774 | 61.6000 | 96.1039 | 86.5854 | 77 | 48 | 74 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | homalt | 77.3850 | 63.3624 | 99.3781 | 77.0744 | 799 | 462 | 799 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | hetalt | 74.9736 | 61.3636 | 96.3415 | 86.1252 | 81 | 51 | 79 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e1 | homalt | 77.3702 | 63.3880 | 99.2665 | 77.2272 | 812 | 469 | 812 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | * | 65.7952 | 49.5082 | 98.0519 | 96.9691 | 151 | 154 | 151 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m1_e0 | het | 69.6080 | 54.2105 | 97.2222 | 97.4636 | 103 | 87 | 105 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | * | 66.1323 | 49.8489 | 98.2143 | 97.1370 | 165 | 166 | 165 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e0 | het | 69.7358 | 54.2857 | 97.4790 | 97.5555 | 114 | 96 | 116 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e1 | * | 66.1355 | 49.8498 | 98.2249 | 97.1927 | 166 | 167 | 166 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l250_m2_e1 | het | 69.5232 | 54.0284 | 97.4790 | 97.6119 | 114 | 97 | 116 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.4943 | 74.0741 | 6.2305 | 81.1065 | 20 | 7 | 20 | 301 | 3 | 0.9967 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 31.9534 | 86.6667 | 19.5876 | 89.3054 | 13 | 2 | 19 | 78 | 3 | 3.8462 | |
| ciseli-custom | SNP | * | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 44.4444 | 66.6667 | 33.3333 | 73.9130 | 4 | 2 | 4 | 8 | 3 | 37.5000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 82.4034 | 96.8987 | 71.6806 | 60.7006 | 1531 | 49 | 1544 | 610 | 3 | 0.4918 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.3834 | 97.8844 | 94.9277 | 48.0419 | 3979 | 86 | 4005 | 214 | 3 | 1.4019 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 67.2414 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 73.6111 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e1 | hetalt | 74.4186 | 66.6667 | 84.2105 | 73.9726 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.7997 | 96.7251 | 66.4796 | 66.7555 | 827 | 28 | 829 | 418 | 3 | 0.7177 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 35.8093 | 88.0952 | 22.4719 | 78.2396 | 37 | 5 | 40 | 138 | 3 | 2.1739 | |
| ciseli-custom | SNP | tv | map_l125_m1_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 75.5319 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e0 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.2793 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ciseli-custom | SNP | tv | map_l125_m2_e1 | hetalt | 71.6981 | 63.3333 | 82.6087 | 79.6460 | 19 | 11 | 19 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.5547 | 73.4026 | 99.7027 | 31.1263 | 919 | 333 | 1006 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3008 | 97.1963 | 99.4307 | 73.6236 | 520 | 15 | 524 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.2454 | 92.7419 | 95.7983 | 99.9211 | 115 | 9 | 114 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7127 | 99.6993 | 99.7261 | 53.8549 | 3647 | 11 | 3641 | 10 | 3 | 30.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 55.7522 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l125_m0_e0 | het | 94.7671 | 95.7411 | 93.8127 | 91.0559 | 562 | 25 | 561 | 37 | 3 | 8.1081 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | homalt | 98.1651 | 98.1707 | 98.1595 | 90.6697 | 161 | 3 | 160 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | * | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | HG002compoundhet | hetalt | 84.2105 | 100.0000 | 72.7273 | 75.0000 | 1 | 0 | 8 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 62.5000 | 87.0968 | 0 | 1 | 5 | 3 | 3 | 100.0000 | |