PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58451-58500 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | C6_15 | segdup | homalt | 0.0000 | 0.0000 | 98.4293 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | D16_PLUS | segdup | het | 79.5789 | 72.9730 | 87.5000 | 90.3614 | 27 | 10 | 28 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 76.9231 | 76.9231 | 76.9231 | 97.6234 | 10 | 3 | 10 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | het | 60.0000 | 75.0000 | 50.0000 | 33.3333 | 6 | 2 | 6 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.1039 | 0 | 1 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 44.4444 | 50.0000 | 40.0000 | 97.7169 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 47.6401 | 79.3548 | 34.0369 | 66.9573 | 123 | 32 | 129 | 250 | 2 | 0.8000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m0_e0 | het | 46.1538 | 41.3793 | 52.1739 | 96.1474 | 12 | 17 | 12 | 11 | 2 | 18.1818 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 51.2821 | 45.4545 | 58.8235 | 97.9858 | 10 | 12 | 10 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 50.0000 | 45.4545 | 55.5556 | 97.9167 | 10 | 12 | 10 | 8 | 2 | 25.0000 | |
| ciseli-custom | INDEL | D6_15 | tech_badpromoters | homalt | 71.4286 | 83.3333 | 62.5000 | 46.6667 | 5 | 1 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 33.7553 | 24.2424 | 55.5556 | 91.2903 | 16 | 50 | 15 | 12 | 2 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 94.9153 | 0 | 26 | 0 | 6 | 2 | 33.3333 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1579 | 52.9412 | 24.1379 | 86.1022 | 27 | 24 | 21 | 66 | 2 | 3.0303 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | homalt | 57.1429 | 46.1538 | 75.0000 | 42.8571 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 24.3902 | 15.1515 | 62.5000 | 94.2446 | 5 | 28 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 34.7826 | 23.5294 | 66.6667 | 93.8776 | 4 | 13 | 4 | 2 | 2 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 25.0000 | 15.0943 | 72.7273 | 94.2105 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 25.0000 | 15.0943 | 72.7273 | 95.2586 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 25.0000 | 15.0943 | 72.7273 | 95.2991 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 31.2655 | 77.7778 | 19.5652 | 86.4307 | 7 | 2 | 9 | 37 | 2 | 5.4054 | |
| ciseli-custom | SNP | * | map_l150_m1_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 80.0000 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.5581 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l150_m2_e1 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.9545 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | * | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.7407 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 90.9091 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | HG002compoundhet | hetalt | 89.3738 | 81.3472 | 99.1579 | 17.9620 | 471 | 108 | 471 | 4 | 2 | 50.0000 | |
| ciseli-custom | SNP | ti | func_cds | het | 98.4573 | 99.2121 | 97.7138 | 25.9135 | 8437 | 67 | 8420 | 197 | 2 | 1.0152 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 5 | 2 | 40.0000 | ||
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.7350 | 81.2500 | 10.5882 | 85.7263 | 13 | 3 | 18 | 152 | 2 | 1.3158 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 86.6667 | 6 | 2 | 8 | 24 | 2 | 8.3333 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 73.3333 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 76.9231 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | hetalt | 74.0741 | 66.6667 | 83.3333 | 77.3585 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 82.6087 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.3333 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e1 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.8710 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | tv | HG002compoundhet | hetalt | 90.1141 | 82.4826 | 99.3017 | 17.9840 | 711 | 151 | 711 | 5 | 2 | 40.0000 | |
| ciseli-custom | SNP | tv | func_cds | het | 92.8964 | 99.2473 | 87.3095 | 32.0576 | 2637 | 20 | 2635 | 383 | 2 | 0.5222 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 65.2174 | 0 | 1 | 0 | 8 | 2 | 25.0000 | ||
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.7249 | 76.4706 | 6.3492 | 79.5676 | 13 | 4 | 12 | 177 | 2 | 1.1299 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 25.1497 | 77.7778 | 15.0000 | 88.4393 | 7 | 2 | 9 | 51 | 2 | 3.9216 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5556 | 100.0000 | 38.4615 | 92.6554 | 6 | 0 | 5 | 8 | 2 | 25.0000 | |
| ciseli-custom | SNP | tv | map_l150_m1_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 80.0000 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | tv | map_l150_m2_e0 | hetalt | 68.5714 | 60.0000 | 80.0000 | 82.5581 | 12 | 8 | 12 | 3 | 2 | 66.6667 | |