PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58251-58300 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7953 | 99.6820 | 99.9089 | 42.1496 | 2194 | 7 | 2194 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4564 | 99.7391 | 99.1754 | 42.0292 | 10704 | 28 | 10704 | 89 | 2 | 2.2472 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2183 | 99.7479 | 98.6942 | 45.7109 | 6727 | 17 | 6727 | 89 | 2 | 2.2472 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7545 | 99.6496 | 99.8596 | 26.6735 | 1422 | 5 | 1422 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | map_l100_m0_e0 | homalt | 76.7317 | 62.2717 | 99.9381 | 70.4634 | 4841 | 2933 | 4841 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | ti | map_l150_m1_e0 | homalt | 72.0545 | 56.3396 | 99.9274 | 79.8232 | 4128 | 3199 | 4128 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | ti | map_l150_m2_e0 | homalt | 73.0167 | 57.5236 | 99.9316 | 81.2297 | 4381 | 3235 | 4381 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | ti | map_l150_m2_e1 | homalt | 73.1394 | 57.6758 | 99.9324 | 81.1976 | 4437 | 3256 | 4437 | 3 | 2 | 66.6667 | |
| ckim-gatk | SNP | ti | map_l250_m0_e0 | * | 64.2229 | 47.9562 | 97.1893 | 97.9938 | 657 | 713 | 657 | 19 | 2 | 10.5263 | |
| ckim-gatk | SNP | ti | map_l250_m0_e0 | het | 65.2051 | 49.3576 | 96.0417 | 98.3380 | 461 | 473 | 461 | 19 | 2 | 10.5263 | |
| ckim-gatk | SNP | ti | map_siren | hetalt | 87.6190 | 80.7018 | 95.8333 | 80.9524 | 46 | 11 | 46 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1730 | 98.8786 | 99.4691 | 69.5432 | 1499 | 17 | 1499 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.7854 | 98.3871 | 99.1870 | 71.7404 | 976 | 16 | 976 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9512 | 96.3636 | 97.5460 | 90.9595 | 159 | 6 | 159 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6646 | 99.3826 | 99.9483 | 59.5457 | 3863 | 24 | 3863 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7825 | 99.7971 | 99.7680 | 39.6992 | 3443 | 7 | 3440 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8130 | 100.0000 | 99.6267 | 42.4234 | 2138 | 0 | 2135 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | map_siren | hetalt | 87.2483 | 80.2469 | 95.5882 | 82.7848 | 65 | 16 | 65 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 90.9907 | 84.0382 | 99.1974 | 59.7025 | 616 | 117 | 618 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | * | 75.7650 | 61.6780 | 98.1917 | 90.2709 | 544 | 338 | 543 | 10 | 2 | 20.0000 | |
| ckim-isaac | INDEL | * | map_l125_m0_e0 | het | 78.6935 | 65.7581 | 97.9644 | 91.7001 | 386 | 201 | 385 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | * | map_l125_m1_e0 | hetalt | 83.1683 | 75.0000 | 93.3333 | 91.0448 | 30 | 10 | 28 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e0 | hetalt | 82.5149 | 73.8095 | 93.5484 | 92.2693 | 31 | 11 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l125_m2_e1 | hetalt | 81.4312 | 72.0930 | 93.5484 | 92.4939 | 31 | 12 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | * | 72.7717 | 57.9767 | 97.7049 | 93.3158 | 298 | 216 | 298 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | * | map_l150_m0_e0 | het | 76.2961 | 62.7566 | 97.2851 | 94.2982 | 214 | 127 | 215 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | * | segdup | homalt | 97.0085 | 94.5833 | 99.5614 | 90.4632 | 908 | 52 | 908 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.3226 | 93.3333 | 87.5000 | 98.2552 | 14 | 1 | 14 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 65.6000 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | het | 80.0532 | 93.4783 | 70.0000 | 96.1710 | 43 | 3 | 42 | 18 | 2 | 11.1111 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 77.7778 | 93.3333 | 66.6667 | 95.8580 | 14 | 1 | 14 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | het | 78.9957 | 93.7500 | 68.2540 | 96.5385 | 45 | 3 | 43 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.2901 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 78.9474 | 93.7500 | 68.1818 | 96.3272 | 15 | 1 | 15 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.6452 | 89.2857 | 73.5294 | 97.5887 | 25 | 3 | 25 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | het | 82.6087 | 95.0000 | 73.0769 | 97.5495 | 19 | 1 | 19 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | * | 76.9231 | 83.3333 | 71.4286 | 97.8373 | 15 | 3 | 15 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l150_m2_e1 | het | 81.0811 | 93.7500 | 71.4286 | 97.1812 | 15 | 1 | 15 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | homalt | 89.1892 | 97.0588 | 82.5000 | 94.7368 | 33 | 1 | 33 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | homalt | 88.8889 | 100.0000 | 80.0000 | 96.8750 | 12 | 0 | 12 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6744 | 99.8915 | 99.4583 | 77.8018 | 921 | 1 | 918 | 5 | 2 | 40.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6327 | 99.6337 | 99.6317 | 78.3060 | 544 | 2 | 541 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7177 | 99.8119 | 99.6237 | 81.1758 | 1061 | 2 | 1059 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.8827 | 65.3768 | 99.4220 | 27.6151 | 321 | 170 | 344 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7593 | 99.7812 | 99.7374 | 46.7118 | 2280 | 5 | 2279 | 6 | 2 | 33.3333 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 62.8141 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 60.5263 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3955 | 97.6311 | 95.1907 | 86.7502 | 577 | 14 | 574 | 29 | 2 | 6.8966 | |
| ckim-dragen | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.4375 | 97.6744 | 99.2126 | 83.3878 | 252 | 6 | 252 | 2 | 2 | 100.0000 | |