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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
58201-58250 / 86044 show all
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
75.9880
478047822
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1468
92.6189
99.9541
23.6736
4304343435722
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8132
93.8694
99.9475
22.1609
3782247380922
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0708
92.4769
99.9552
27.1601
4413359446622
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8968
100.0000
99.7938
64.2989
968096822
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
ckim-gatkINDELI1_5map_l125_m0_e0*
96.5389
98.7097
94.4615
92.2711
3064307182
11.1111
ckim-gatkINDELI1_5map_l125_m0_e0homalt
98.7013
100.0000
97.4359
85.9712
114011432
66.6667
ckim-gatkINDELI1_5map_l125_m1_e0homalt
99.3902
99.6942
99.0881
83.8329
326132632
66.6667
ckim-gatkINDELI1_5map_l125_m2_e0homalt
99.4152
99.7067
99.1254
85.0480
340134032
66.6667
ckim-gatkINDELI1_5map_l125_m2_e1homalt
99.4186
99.7085
99.1304
85.2375
342134232
66.6667
ckim-gatkINDELI1_5map_l150_m0_e0*
95.8387
97.7273
94.0217
94.6543
1724173112
18.1818
ckim-gatkINDELI1_5map_l150_m0_e0homalt
98.5294
100.0000
97.1014
89.4009
6706722
100.0000
ckim-gatkINDELI1_5map_l150_m1_e0homalt
98.9950
99.4949
98.5000
87.4372
197119732
66.6667
ckim-gatkINDELI1_5map_l150_m2_e0homalt
99.0099
99.5025
98.5222
88.8462
200120032
66.6667
ckim-gatkINDELI1_5map_l150_m2_e1homalt
99.0244
99.5098
98.5437
88.9009
203120332
66.6667
ckim-gatkINDELI1_5map_l250_m1_e0*
93.5780
96.2264
91.0714
97.2098
1024102102
20.0000
ckim-gatkINDELI1_5map_l250_m1_e0homalt
97.7778
100.0000
95.6522
94.3696
4404422
100.0000
ckim-gatkINDELI1_5map_l250_m2_e0*
93.9655
96.4602
91.5966
97.4551
1094109102
20.0000
ckim-gatkINDELI1_5map_l250_m2_e0homalt
97.8261
100.0000
95.7447
95.1696
4504522
100.0000
ckim-gatkINDELI1_5map_l250_m2_e1*
94.0171
96.4912
91.6667
97.5093
1104110102
20.0000
ckim-gatkINDELI1_5map_l250_m2_e1homalt
97.8723
100.0000
95.8333
95.1759
4604622
100.0000
ckim-gatkINDELI1_5segdup*
98.0421
99.1501
96.9585
95.6110
105091052332
6.0606
ckim-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
ckim-gatkINDELI6_15HG002compoundhethetalt
95.9864
92.3041
99.9748
28.2337
7880657792122
100.0000
ckim-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0504
98.6372
99.4670
77.6637
152021149382
25.0000
ckim-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.4810
98.0100
98.9565
72.9412
5911256962
33.3333
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.5840
97.5019
99.6904
61.7751
128833128842
50.0000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
67.8940
216021622
100.0000
ckim-gatkINDELI6_15map_siren*
97.5207
96.7213
98.3333
85.9287
2951029552
40.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.1612
99.0320
99.2908
52.9835
2660262660192
10.5263
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7416
99.8545
99.6289
56.0363
617596175232
8.6957
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6319
99.8474
99.4174
58.2620
392563925232
8.6957
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7697
99.5913
99.9487
76.0057
389916389922
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7622
99.5982
99.9267
30.6657
272711272722
100.0000
ckim-gatkSNP*map_l100_m0_e0homalt
76.2549
61.6437
99.9442
71.4939
71634457716342
50.0000
ckim-gatkSNP*map_l150_m1_e0homalt
71.6189
55.8059
99.9365
80.2510
62914982629142
50.0000
ckim-gatkSNP*map_l150_m2_e0homalt
72.5580
56.9536
99.9400
81.6478
66635036666342
50.0000
ckim-gatkSNP*map_l150_m2_e1homalt
72.6891
57.1151
99.9408
81.5997
67555072675542
50.0000
ckim-gatkSNP*map_l250_m0_e0*
63.1579
46.9321
96.5318
98.1002
100211331002362
5.5556
ckim-gatkSNP*map_l250_m0_e0het
63.7809
47.9416
95.2507
98.3918
722784722362
5.5556
ckim-gatkSNP*map_sirenhetalt
87.2483
80.2469
95.5882
82.7848
65166532
66.6667
ckim-gatkSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.0196
154315422
100.0000
ckim-gatkSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.0588
7917922
100.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.1532
99.1262
99.1803
52.5045
1815161815152
13.3333
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7261
99.8504
99.6021
49.5356
400564005162
12.5000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6078
99.8428
99.3740
52.6140
254042540162
12.5000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.9405
96.8326
99.0741
91.0854
214721422
100.0000
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
98.0132
97.3684
98.6667
91.3345
148414822
100.0000