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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
58151-58200 / 86044 show all
ckim-gatkINDEL*map_l250_m2_e0homalt
98.2609
98.2609
98.2609
95.6538
113211322
100.0000
ckim-gatkINDEL*map_l250_m2_e1het
89.9563
97.6303
83.4008
97.6831
2065206412
4.8781
ckim-gatkINDEL*map_l250_m2_e1homalt
98.2759
98.2759
98.2759
95.7196
114211422
100.0000
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.9275
98.4375
97.4227
86.2069
3786378102
20.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
99.3521
100.0000
98.7124
72.0288
230023032
66.6667
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
94.5055
93.4783
95.5556
67.1533
4334322
100.0000
ckim-gatkINDELD16_PLUSmap_siren*
93.4849
95.8042
91.2752
95.1513
1376136132
15.3846
ckim-gatkINDELD16_PLUSmap_sirenhet
91.8695
97.4359
86.9048
96.2700
76273112
18.1818
ckim-gatkINDELD16_PLUSsegdup*
91.0569
96.5517
86.1538
96.9253
5625692
22.2222
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
82.7698
70.8758
99.4609
27.5391
34814336922
100.0000
ckim-gatkINDELD1_5map_l100_m0_e0homalt
99.0329
99.2248
98.8417
84.1880
256225632
66.6667
ckim-gatkINDELD1_5map_l100_m1_e0homalt
99.3232
99.1554
99.4915
83.5517
587558732
66.6667
ckim-gatkINDELD1_5map_l100_m2_e0homalt
99.3443
99.1817
99.5074
84.1571
606560632
66.6667
ckim-gatkINDELD1_5map_l100_m2_e1homalt
99.3538
99.1935
99.5146
84.2025
615561532
66.6667
ckim-gatkINDELD1_5map_l125_m0_e0homalt
98.9899
99.3243
98.6577
87.4685
147114722
100.0000
ckim-gatkINDELD1_5map_l125_m1_e0homalt
99.2826
99.1404
99.4253
85.7785
346334622
100.0000
ckim-gatkINDELD1_5map_l125_m2_e0homalt
99.3122
99.1758
99.4490
86.4855
361336122
100.0000
ckim-gatkINDELD1_5map_l125_m2_e1homalt
99.3271
99.1935
99.4609
86.4599
369336922
100.0000
ckim-gatkINDELD1_5map_l150_m2_e1homalt
98.9899
98.7903
99.1903
88.6018
245324522
100.0000
ckim-gatkINDELD1_5segdup*
98.1263
99.5467
96.7458
96.0214
109851100372
5.4054
ckim-gatkINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5493
359035922
100.0000
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.2332
96.8504
97.6190
80.0633
123412332
66.6667
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5517
99.4030
99.7009
66.4548
9996100032
66.6667
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.0242
78.7844
99.7191
26.2176
68718571022
100.0000
ckim-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.6618
99.7743
99.5495
35.0877
442144222
100.0000
ckim-gatkINDELD6_15map_l100_m1_e0*
95.7529
96.1240
95.3846
89.1304
24810248122
16.6667
ckim-gatkINDELD6_15map_l100_m1_e0het
94.2529
97.6190
91.1111
91.9355
1233123122
16.6667
ckim-gatkINDELD6_15map_l100_m2_e0*
95.6522
95.8333
95.4717
89.6927
25311253122
16.6667
ckim-gatkINDELD6_15map_l100_m2_e0het
94.0741
96.9466
91.3669
92.3416
1274127122
16.6667
ckim-gatkINDELD6_15map_l100_m2_e1*
95.6364
95.6364
95.6364
89.5556
26312263122
16.6667
ckim-gatkINDELD6_15map_l100_m2_e1het
94.2446
97.0370
91.6084
92.2744
1314131122
16.6667
ckim-gatkINDELD6_15map_siren*
97.2468
97.2495
97.2441
86.7501
49514494142
14.2857
ckim-gatkINDELD6_15map_sirenhet
96.8229
98.2143
95.4704
89.1534
2755274132
15.3846
ckim-gatkINDELI16_PLUSHG002complexvarhetalt
96.6468
94.0299
99.4135
66.8932
3152033922
100.0000
ckim-gatkINDELI16_PLUSHG002compoundhethetalt
95.8494
92.1166
99.8975
44.7808
1928165195022
100.0000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
95.0000
92.2330
97.9381
88.2850
1901619042
50.0000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.1538
100.0000
92.5926
92.7224
2502522
100.0000
ckim-gatkINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.3739
93.3105
99.6454
63.1854
5443956222
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.4002
93.3232
99.6870
67.8894
6154463722
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.1212
87.3563
97.4359
84.8544
76117622
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.0820
10122
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9615
90.9091
99.3921
56.0160
3103132722
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.4002
93.3232
99.6870
67.8894
6154463722
100.0000
ckim-gatkINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.9718
91.0394
99.2593
62.7586
2542526822
100.0000
ckim-gatkINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
98.0545
97.4227
98.6945
75.5740
3781037852
40.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1713
92.6560
99.9638
35.0529
5463433552522
100.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4113
99.1196
99.7048
77.3525
135112135142
50.0000