PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57951-58000 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4277 | 98.8814 | 99.9800 | 49.5688 | 9989 | 113 | 9998 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.1337 | 98.6144 | 99.6585 | 48.5413 | 2918 | 41 | 2918 | 10 | 2 | 20.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0572 | 98.8725 | 99.2426 | 41.5382 | 10611 | 121 | 10614 | 81 | 2 | 2.4691 | |
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | * | 32.0231 | 19.0688 | 99.8668 | 96.6434 | 1499 | 6362 | 1499 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | het | 34.9037 | 21.1497 | 99.8148 | 97.0413 | 1078 | 4019 | 1078 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 40.0000 | 40.0000 | 40.0000 | 99.5421 | 2 | 3 | 2 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 44.4444 | 50.0000 | 40.0000 | 99.5327 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 87.6777 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 86.9347 | 1 | 0 | 0 | 26 | 2 | 7.6923 | |
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 88.1188 | 0 | 0 | 0 | 12 | 2 | 16.6667 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.7551 | 0 | 0 | 0 | 12 | 2 | 16.6667 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 83.1933 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 82.6087 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 83.8725 | 78.8462 | 89.5833 | 67.1233 | 41 | 11 | 43 | 5 | 2 | 40.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 57.1429 | 46.1538 | 75.0000 | 33.3333 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 62.3377 | 53.3333 | 75.0000 | 92.8571 | 8 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.5620 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.7419 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1649 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1416 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | homalt | 73.0707 | 59.6491 | 94.2857 | 96.1957 | 34 | 23 | 33 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.3844 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 88.7640 | 18 | 6 | 18 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.8889 | 85.7143 | 92.3077 | 87.9630 | 24 | 4 | 24 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | homalt | 89.2857 | 86.2069 | 92.5926 | 87.6147 | 25 | 4 | 25 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | het | 78.2609 | 81.8182 | 75.0000 | 96.9620 | 9 | 2 | 9 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | het | 77.7385 | 78.5714 | 76.9231 | 96.9697 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | het | 77.7385 | 78.5714 | 76.9231 | 97.0455 | 11 | 3 | 10 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | homalt | 66.6667 | 66.6667 | 66.6667 | 50.0000 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 10.1868 | 6.3158 | 26.3158 | 62.7451 | 6 | 89 | 5 | 14 | 2 | 14.2857 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 20.8955 | 13.2075 | 50.0000 | 55.5556 | 7 | 46 | 8 | 8 | 2 | 25.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 76.4706 | 0 | 87 | 0 | 4 | 2 | 50.0000 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 70.5882 | 75.0000 | 66.6667 | 35.7143 | 6 | 2 | 6 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | * | 22.2222 | 16.6667 | 33.3333 | 76.9231 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 33.3333 | 66.6667 | 0 | 2 | 1 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0494 | 98.1771 | 97.9221 | 86.1908 | 377 | 7 | 377 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0958 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.5366 | 99.0196 | 98.0583 | 64.6048 | 101 | 1 | 101 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.3333 | 91.3043 | 95.4545 | 68.1159 | 42 | 4 | 42 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | * | 93.3991 | 94.4056 | 92.4138 | 94.9653 | 135 | 8 | 134 | 11 | 2 | 18.1818 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | het | 91.7899 | 96.1538 | 87.8049 | 95.9883 | 75 | 3 | 72 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | * | 90.3226 | 96.5517 | 84.8485 | 96.3435 | 56 | 2 | 56 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D16_PLUS | segdup | het | 87.5000 | 100.0000 | 77.7778 | 96.5170 | 37 | 0 | 35 | 10 | 2 | 20.0000 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.9090 | 71.0794 | 99.4624 | 29.2776 | 349 | 142 | 370 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 96.0913 | 95.6007 | 96.5870 | 86.7899 | 565 | 26 | 566 | 20 | 2 | 10.0000 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.2278 | 99.6124 | 98.8462 | 83.9208 | 257 | 1 | 257 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4932 | 99.4932 | 99.4932 | 83.1098 | 589 | 3 | 589 | 3 | 2 | 66.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5090 | 99.5090 | 99.5090 | 83.7888 | 608 | 3 | 608 | 3 | 2 | 66.6667 | |