PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57801-57850 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | homalt | 97.8541 | 98.2759 | 97.4359 | 95.3627 | 114 | 2 | 114 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | segdup | het | 98.8787 | 99.2497 | 98.5105 | 95.1038 | 1455 | 11 | 1455 | 22 | 2 | 9.0909 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2903 | 98.1771 | 96.4194 | 85.9201 | 377 | 7 | 377 | 14 | 2 | 14.2857 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.6889 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 68.6131 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | * | 92.1664 | 95.1049 | 89.4040 | 94.5171 | 136 | 7 | 135 | 16 | 2 | 12.5000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | map_siren | het | 91.8695 | 97.4359 | 86.9048 | 95.6967 | 76 | 2 | 73 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | D16_PLUS | segdup | * | 92.5620 | 96.5517 | 88.8889 | 96.3287 | 56 | 2 | 56 | 7 | 2 | 28.5714 | |
| bgallagher-sentieon | INDEL | D16_PLUS | segdup | het | 90.9091 | 100.0000 | 83.3333 | 96.5742 | 37 | 0 | 35 | 7 | 2 | 28.5714 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.2405 | 99.4924 | 98.9899 | 60.2410 | 196 | 1 | 196 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 58.3333 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 97.9106 | 98.9848 | 96.8595 | 86.1143 | 585 | 6 | 586 | 19 | 2 | 10.5263 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.4197 | 99.6124 | 99.2278 | 83.8529 | 257 | 1 | 257 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5773 | 99.4932 | 99.6616 | 83.0562 | 589 | 3 | 589 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5905 | 99.5090 | 99.6721 | 83.7116 | 608 | 3 | 608 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5964 | 99.5161 | 99.6769 | 83.7873 | 617 | 3 | 617 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9899 | 99.3243 | 98.6577 | 87.1330 | 147 | 1 | 147 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4269 | 99.4269 | 99.4269 | 85.2494 | 347 | 2 | 347 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4505 | 99.4505 | 99.4505 | 86.0108 | 362 | 2 | 362 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4624 | 99.4624 | 99.4624 | 86.0098 | 370 | 2 | 370 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1935 | 99.1935 | 99.1935 | 88.0424 | 246 | 2 | 246 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | het | 99.1706 | 99.6047 | 98.7402 | 81.3769 | 2268 | 9 | 2273 | 29 | 2 | 6.8966 | |
| bgallagher-sentieon | INDEL | D1_5 | segdup | * | 99.5476 | 99.6374 | 99.4580 | 94.7935 | 1099 | 4 | 1101 | 6 | 2 | 33.3333 | |
| bgallagher-sentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.4986 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 78.7879 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.6059 | 75.0000 | 99.7054 | 26.4355 | 654 | 218 | 677 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7686 | 99.6532 | 99.8842 | 35.8231 | 1724 | 6 | 1725 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.7507 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | * | 96.3250 | 96.5116 | 96.1390 | 87.0110 | 249 | 9 | 249 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 95.7529 | 98.4127 | 93.2331 | 89.8162 | 124 | 2 | 124 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | * | 96.2121 | 96.2121 | 96.2121 | 87.5589 | 254 | 10 | 254 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.5224 | 97.7099 | 93.4307 | 90.1722 | 128 | 3 | 128 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1749 | 96.0000 | 96.3504 | 87.4023 | 264 | 11 | 264 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | het | 95.6522 | 97.7778 | 93.6170 | 90.0774 | 132 | 3 | 132 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | * | 97.5395 | 97.4460 | 97.6331 | 85.2014 | 496 | 13 | 495 | 12 | 2 | 16.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | het | 97.3388 | 98.2143 | 96.4789 | 87.3553 | 275 | 5 | 274 | 10 | 2 | 20.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.5446 | 93.6893 | 97.4747 | 88.2562 | 193 | 13 | 193 | 5 | 2 | 40.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.6893 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.5572 | 93.6535 | 99.6466 | 65.5088 | 546 | 37 | 564 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.7711 | 88.5057 | 97.4684 | 84.9810 | 77 | 10 | 77 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.9615 | 90.9091 | 99.3921 | 58.2487 | 310 | 31 | 327 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.0984 | 91.2587 | 99.2754 | 54.6053 | 261 | 25 | 274 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.2125 | 91.3158 | 99.4565 | 63.2368 | 347 | 33 | 366 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.8850 | 94.2337 | 99.6899 | 70.3721 | 621 | 38 | 643 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.3796 | 89.9642 | 99.2509 | 66.4573 | 251 | 28 | 265 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.8071 | 93.8433 | 99.9643 | 38.7051 | 5533 | 363 | 5593 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.2003 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.9639 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |