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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
57701-57750 / 86044 show all
dgrover-gatkINDELD1_5map_l100_m0_e0het
97.9819
98.4772
97.4916
87.0169
5829583152
13.3333
dgrover-gatkINDELD1_5map_l100_m0_e0homalt
99.0291
98.8372
99.2218
84.4337
255325522
100.0000
dgrover-gatkINDELD1_5map_l100_m1_e0homalt
99.4073
99.1554
99.6604
83.4225
587558722
100.0000
dgrover-gatkINDELD1_5map_l100_m2_e0homalt
99.4258
99.1817
99.6711
84.0629
606560622
100.0000
dgrover-gatkINDELD1_5map_l100_m2_e1homalt
99.4341
99.1935
99.6759
84.1347
615561522
100.0000
dgrover-gatkINDELD1_5map_l125_m0_e0homalt
98.3051
97.9730
98.6395
87.7704
145314522
100.0000
dgrover-gatkINDELD1_5map_l125_m1_e0het
98.2870
98.6226
97.9536
88.0013
71610718152
13.3333
dgrover-gatkINDELD1_5map_l125_m1_e0homalt
99.1379
98.8539
99.4236
85.6730
345434522
100.0000
dgrover-gatkINDELD1_5map_l125_m2_e0het
98.3718
98.6911
98.0545
88.4753
75410756152
13.3333
dgrover-gatkINDELD1_5map_l125_m2_e0homalt
99.1736
98.9011
99.4475
86.3961
360436022
100.0000
dgrover-gatkINDELD1_5map_l125_m2_e1het
98.3844
98.7013
98.0695
88.5449
76010762152
13.3333
dgrover-gatkINDELD1_5map_l125_m2_e1homalt
99.1914
98.9247
99.4595
86.3921
368436822
100.0000
dgrover-gatkINDELD1_5map_l150_m1_e0het
97.9436
98.5477
97.3469
90.2488
4757477132
15.3846
dgrover-gatkINDELD1_5map_l150_m2_e0het
98.0706
98.6381
97.5096
90.6250
5077509132
15.3846
dgrover-gatkINDELD1_5map_l150_m2_e1het
98.0028
98.4674
97.5425
90.6603
5148516132
15.3846
dgrover-gatkINDELD1_5map_l150_m2_e1homalt
98.7854
98.3871
99.1870
88.4507
244424422
100.0000
dgrover-gatkINDELD1_5segdup*
99.5471
99.5467
99.5475
94.9619
10985110052
40.0000
dgrover-gatkINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5665
359035922
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.2332
96.8504
97.6190
79.0698
123412332
66.6667
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.6017
99.5025
99.7012
65.7688
10005100132
66.6667
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6526
99.6524
99.6528
63.6057
860386132
66.6667
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.2389
79.1284
99.7203
27.1152
69018271322
100.0000
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10*
84.9618
80.0000
90.5797
79.6460
12431125132
15.3846
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10het
82.9268
82.2581
83.6066
84.9383
511151102
20.0000
ckim-isaacINDELI6_15map_siren*
63.4176
46.8852
97.9592
84.2105
14316214432
66.6667
ckim-isaacSNP*func_cds*
99.4183
98.8760
99.9666
20.1352
179462041794662
33.3333
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.8086
94.8250
98.8768
51.0057
25471392553292
6.8966
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.5210
93.9856
99.1970
53.9957
23441502347192
10.5263
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
63.4921
48.7805
90.9091
88.2353
20212022
100.0000
ckim-isaacSNP*map_l125_m0_e0homalt
64.1166
47.1990
99.9369
61.5104
31683544316822
100.0000
ckim-isaacSNP*map_l150_m0_e0het
72.5569
57.0403
99.6699
83.7697
452934114529152
13.3333
ckim-isaacSNP*map_l150_m0_e0homalt
62.3254
45.2922
99.8921
68.1060
18522237185222
100.0000
ckim-isaacSNP*map_l250_m0_e0*
66.1457
49.5550
99.4361
93.9169
10581077105862
33.3333
ckim-isaacSNP*map_l250_m1_e0homalt
58.8606
41.7377
99.8058
83.7974
10281435102822
100.0000
ckim-isaacSNP*map_l250_m2_e0het
67.0153
50.5776
99.2819
92.1809
262725672627192
10.5263
ckim-isaacSNP*map_l250_m2_e0homalt
59.1933
42.0700
99.8233
85.8571
11301556113022
100.0000
ckim-isaacSNP*map_l250_m2_e1het
67.0943
50.6649
99.2926
92.2258
266725972667192
10.5263
ckim-isaacSNP*map_l250_m2_e1homalt
59.3225
42.2001
99.8259
85.8515
11471571114722
100.0000
ckim-isaacSNPtifunc_cds*
99.4788
98.9918
99.9707
19.0273
136481391364842
50.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.7262
94.6148
98.9340
44.5934
24071372413262
7.6923
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.3282
93.7975
98.9993
46.0791
1482981484152
13.3333
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.3541
87.9896
99.4152
75.0910
3374634022
100.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
98.3899
96.9496
99.8736
43.2587
3941124395152
40.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
54.9020
40.0000
87.5000
88.3212
14211422
100.0000
ckim-isaacSNPtimap_l125_m0_e0het
75.4138
60.6559
99.6620
78.2483
501232515012172
11.7647
ckim-isaacSNPtimap_l125_m0_e0homalt
65.7804
49.0314
99.9093
59.9855
22022289220222
100.0000
ckim-isaacSNPtimap_l150_m0_e0homalt
64.3926
47.5190
99.8478
66.4710
13121449131222
100.0000
ckim-isaacSNPtimap_l150_m1_e0het
75.2265
60.4123
99.6666
78.7514
747348977473252
8.0000
ckim-isaacSNPtimap_l150_m2_e0het
75.7150
61.0434
99.6704
79.9741
786350187863262
7.6923
ckim-isaacSNPtimap_l250_m1_e0*
66.4534
49.9017
99.4343
90.2759
228522942285132
15.3846