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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
57601-57650 / 86044 show all
ckim-vqsrINDELD6_15map_l100_m2_e0het
94.7368
96.1832
93.3333
92.5456
126512692
22.2222
ckim-vqsrINDELD6_15map_l100_m2_e1*
95.9707
95.2727
96.6790
89.6919
2621326292
22.2222
ckim-vqsrINDELD6_15map_l100_m2_e1het
94.8905
96.2963
93.5252
92.4743
130513092
22.2222
ckim-vqsrINDELD6_15map_siren*
97.3325
96.8566
97.8131
86.8634
49316492112
18.1818
ckim-vqsrINDELD6_15map_sirenhet
96.9741
97.5000
96.4539
89.3222
2737272102
20.0000
ckim-vqsrINDELI16_PLUSHG002complexvarhetalt
96.6468
94.0299
99.4135
66.8932
3152033922
100.0000
ckim-vqsrINDELI16_PLUSHG002compoundhethetalt
95.7976
92.0210
99.8974
44.8061
1926167194822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
93.9394
90.2913
97.8947
88.4988
1862018642
50.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.1538
100.0000
92.5926
92.7224
2502522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2821
93.1389
99.6448
63.2266
5434056122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.1212
87.3563
97.4359
84.8544
76117622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.0820
10122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9615
90.9091
99.3921
56.0160
3103132722
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.9718
91.0394
99.2593
62.7586
2542526822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
97.9112
96.6495
99.2063
75.8157
3751337532
66.6667
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4113
99.1196
99.7048
77.3525
135112135142
50.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
75.9880
478047822
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1236
92.5759
99.9541
23.6819
4302345435522
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7868
93.8198
99.9475
22.1700
3780249380722
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0482
92.4350
99.9552
27.1689
4411361446422
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8968
100.0000
99.7938
64.2989
968096822
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
ckim-vqsrINDELI1_5map_l100_m0_e0*
97.3193
96.8692
97.7737
89.6605
52617527122
16.6667
ckim-vqsrINDELI1_5map_l100_m0_e0homalt
99.2840
100.0000
98.5782
81.2278
208020832
66.6667
ckim-vqsrINDELI1_5map_l125_m1_e0*
97.3838
96.3855
98.4029
90.0233
80030801132
15.3846
ckim-vqsrINDELI1_5map_l125_m2_e0*
97.4066
96.3827
98.4524
90.8257
82631827132
15.3846
ckim-vqsrINDELI1_5map_l125_m2_e1*
97.3861
96.3218
98.4742
90.8974
83832839132
15.3846
ckim-vqsrINDELI1_5map_l150_m1_e0*
96.6092
95.6522
97.5855
92.5754
48422485122
16.6667
ckim-vqsrINDELI1_5map_l150_m2_e0*
96.5943
95.5684
97.6424
93.2903
49623497122
16.6667
ckim-vqsrINDELI1_5map_l150_m2_e1*
96.5736
95.4802
97.6923
93.3153
50724508122
16.6667
ckim-vqsrINDELI1_5segdup*
99.0079
98.8669
99.1493
95.7156
104712104992
22.2222
ckim-vqsrINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
ckim-vqsrINDELI6_15HG002compoundhethetalt
95.9547
92.2455
99.9747
28.2465
7875662791622
100.0000
ckim-vqsrINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9845
98.4426
99.5324
77.7099
151724149072
28.5714
ckim-vqsrINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.3114
97.6783
98.9529
73.0099
5891456762
33.3333
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.5441
97.3505
99.7673
61.8300
128635128632
66.6667
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
67.8940
216021622
100.0000
ckim-vqsrSNP**hetalt
97.4148
95.1780
99.7593
54.6645
8294282922
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2158
98.9203
99.5131
53.0673
2657292657132
15.3846
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7253
99.7898
99.6609
56.0602
6171136171212
9.5238
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6445
99.8219
99.4677
58.2805
392473924212
9.5238
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6927
99.4381
99.9487
76.0337
389322389322
100.0000
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.0811
99.3345
98.8289
41.8039
18062121180592142
0.9346
ckim-vqsrSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.8227
99.5014
98.1531
44.9941
1137657113732142
0.9346