PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57551-57600 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.9048 | 48.1481 | 86.6667 | 86.6071 | 13 | 14 | 13 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 68.0484 | 51.8421 | 98.9950 | 48.4456 | 197 | 183 | 197 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 77.9874 | 66.6667 | 93.9394 | 73.1707 | 30 | 15 | 31 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 84.5899 | 76.6667 | 94.3396 | 70.0565 | 46 | 14 | 50 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.9784 | 94.5248 | 99.5628 | 57.7562 | 915 | 53 | 911 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 56.9192 | 62.7451 | 52.0833 | 91.3514 | 32 | 19 | 25 | 23 | 2 | 8.6957 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 96.2076 | 93.2907 | 99.3127 | 27.2500 | 292 | 21 | 289 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | * | 81.3853 | 69.2449 | 98.6877 | 86.2752 | 376 | 167 | 376 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 83.4783 | 75.0000 | 94.1176 | 87.1698 | 33 | 11 | 32 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | homalt | 78.8863 | 65.6371 | 98.8372 | 75.6719 | 340 | 178 | 340 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 83.4783 | 75.0000 | 94.1176 | 88.4354 | 33 | 11 | 32 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | homalt | 79.0960 | 65.9134 | 98.8701 | 77.8750 | 350 | 181 | 350 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 83.9506 | 75.5556 | 94.4444 | 88.0795 | 34 | 11 | 34 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | homalt | 79.1574 | 66.1111 | 98.6188 | 77.9671 | 357 | 183 | 357 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | * | 82.3612 | 70.6024 | 98.8196 | 86.4457 | 586 | 244 | 586 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | * | 82.6884 | 71.0618 | 98.8636 | 87.6156 | 609 | 248 | 609 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | * | 82.9105 | 71.3793 | 98.8854 | 87.6621 | 621 | 249 | 621 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | map_siren | hetalt | 85.4934 | 76.7857 | 96.4286 | 82.2410 | 86 | 26 | 81 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | segdup | homalt | 97.0748 | 94.7146 | 99.5556 | 90.3516 | 448 | 25 | 448 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.5179 | 74.0741 | 90.6250 | 67.6768 | 60 | 21 | 58 | 6 | 2 | 33.3333 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.5429 | 76.4706 | 94.5205 | 47.1014 | 65 | 20 | 69 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.1050 | 83.6066 | 90.9091 | 64.1694 | 102 | 20 | 100 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.3095 | 98.4375 | 98.1818 | 86.2989 | 378 | 6 | 378 | 7 | 2 | 28.5714 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5055 | 93.4783 | 95.5556 | 67.1533 | 43 | 3 | 43 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | * | 93.8073 | 95.8042 | 91.8919 | 95.1823 | 137 | 6 | 136 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | het | 92.4513 | 97.4359 | 87.9518 | 96.3127 | 76 | 2 | 73 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | segdup | * | 91.8033 | 96.5517 | 87.5000 | 96.9711 | 56 | 2 | 56 | 8 | 2 | 25.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.7698 | 70.8758 | 99.4609 | 27.5391 | 348 | 143 | 369 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | het | 96.0537 | 96.7851 | 95.3333 | 90.9829 | 572 | 19 | 572 | 28 | 2 | 7.1429 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.0329 | 99.2248 | 98.8417 | 84.1880 | 256 | 2 | 256 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3232 | 99.1554 | 99.4915 | 83.5517 | 587 | 5 | 587 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3443 | 99.1817 | 99.5074 | 84.1571 | 606 | 5 | 606 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3538 | 99.1935 | 99.5146 | 84.2025 | 615 | 5 | 615 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9899 | 99.3243 | 98.6577 | 87.4685 | 147 | 1 | 147 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.2826 | 99.1404 | 99.4253 | 85.7785 | 346 | 3 | 346 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.3122 | 99.1758 | 99.4490 | 86.4855 | 361 | 3 | 361 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.3271 | 99.1935 | 99.4609 | 86.4599 | 369 | 3 | 369 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.9899 | 98.7903 | 99.1903 | 88.6018 | 245 | 3 | 245 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_siren | het | 97.8636 | 97.4967 | 98.2332 | 85.9953 | 2220 | 57 | 2224 | 40 | 2 | 5.0000 | |
| ckim-vqsr | INDEL | D1_5 | segdup | * | 99.1399 | 99.1840 | 99.0958 | 96.1257 | 1094 | 9 | 1096 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5493 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 80.0633 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5517 | 99.4030 | 99.7009 | 66.4548 | 999 | 6 | 1000 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.5365 | 99.6524 | 64.2502 | 859 | 4 | 860 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 88.0242 | 78.7844 | 99.7191 | 26.2176 | 687 | 185 | 710 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6618 | 99.7743 | 99.5495 | 35.0877 | 442 | 1 | 442 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m1_e0 | * | 96.1089 | 95.7364 | 96.4844 | 89.2797 | 247 | 11 | 247 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m1_e0 | het | 94.9416 | 96.8254 | 93.1298 | 92.1557 | 122 | 4 | 122 | 9 | 2 | 22.2222 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | * | 96.0000 | 95.4545 | 96.5517 | 89.8325 | 252 | 12 | 252 | 9 | 2 | 22.2222 | |