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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt % FP ma
57501-57550 / 86044 show all
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.1888
97.5806
96.8000
90.9157
121312142
50.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7972
99.8841
99.7104
37.7838
344643443102
20.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.7664
100.0000
99.5338
39.4410
213802135102
20.0000
dgrover-gatkSNPtvmap_l150_m0_e0homalt
99.2811
98.7952
99.7719
75.6572
131216131232
66.6667
dgrover-gatkSNPtvmap_l250_m0_e0het
96.5998
96.8531
96.3478
94.1784
55418554212
9.5238
dgrover-gatkSNPtvmap_l250_m0_e0homalt
98.1818
97.9275
98.4375
92.5983
189418932
66.6667
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
84.4720
80.0000
89.4737
99.9555
1641722
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
100.0000
87.5000
99.3504
1201422
100.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
80.0000
71.2644
91.1765
99.9005
62256262
33.3333
egarrison-hhgaINDEL*map_l250_m1_e0het
95.5145
95.2632
95.7672
95.8815
181918182
25.0000
egarrison-hhgaINDEL*map_l250_m2_e0het
95.9427
95.7143
96.1722
95.9846
201920182
25.0000
ckim-isaacINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
88.9417
80.9524
98.6807
38.3740
3748837452
40.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_diTR_51to200homalt
80.7339
69.2913
96.7033
44.5122
88398832
66.6667
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
84.2857
75.1592
95.9350
54.2751
1183911852
40.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
78.7229
70.4918
89.1304
63.2000
43184152
40.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
75.3247
63.0435
93.5484
55.0725
29172922
100.0000
ckim-isaacINDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
80.7692
87.5000
75.0000
75.0000
71622
100.0000
ckim-isaacINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
89.1445
83.7838
95.2381
81.2500
3164022
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
76.2995
61.9145
99.3921
30.0000
30418732722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
54.0000
38.0282
93.1034
47.2727
27442722
100.0000
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
72.7273
100.0000
57.1429
99.9868
10432
66.6667
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
72.7273
100.0000
57.1429
99.7676
10432
66.6667
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
91.8919
86.2944
98.2659
34.2205
1702717032
66.6667
ckim-isaacINDELD1_5map_l125_m1_e0hetalt
73.2558
69.2308
77.7778
95.6311
94722
100.0000
ckim-isaacINDELD1_5map_l125_m2_e0hetalt
72.7273
66.6667
80.0000
95.9514
105822
100.0000
ckim-isaacINDELD1_5map_l125_m2_e1hetalt
72.7273
66.6667
80.0000
96.0630
105822
100.0000
ckim-isaacINDELD1_5map_l150_m1_e0het
79.8048
67.2199
98.1873
91.0516
32415832562
33.3333
ckim-isaacINDELD1_5map_l150_m2_e0het
79.9092
67.3152
98.3003
91.4899
34616834762
33.3333
ckim-isaacINDELD1_5map_l150_m2_e1het
79.5911
66.8582
98.3146
91.5439
34917335062
33.3333
ckim-isaacINDELD1_5map_l250_m1_e0*
64.8438
48.5380
97.6471
96.7779
83888322
100.0000
ckim-isaacINDELD1_5map_l250_m1_e0het
70.1405
54.9550
96.9231
97.0865
61506322
100.0000
ckim-isaacINDELD1_5map_l250_m2_e0*
65.2174
48.9130
97.8261
96.9405
90949022
100.0000
ckim-isaacINDELD1_5map_l250_m2_e0het
69.8630
54.5455
97.1429
97.2167
66556822
100.0000
ckim-isaacINDELD1_5map_l250_m2_e1*
64.9819
48.6486
97.8261
97.0101
90959022
100.0000
ckim-isaacINDELD1_5map_l250_m2_e1het
69.4952
54.0984
97.1429
97.2741
66566822
100.0000
ckim-isaacINDELD1_5segduphet
98.8393
98.5549
99.1254
93.5804
6821068062
33.3333
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
93.0003
88.7701
97.6540
47.5385
3324233382
25.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
68.7192
73.8095
64.2857
97.6068
311118102
20.0000
ckim-isaacINDELD6_15map_l125_m1_e0*
61.6279
45.2991
96.3636
90.1434
53645322
100.0000
ckim-isaacINDELD6_15map_l125_m2_e0*
60.1093
43.6508
96.4912
90.7015
55715522
100.0000
ckim-isaacINDELD6_15map_l125_m2_e1*
59.4595
42.9688
96.4912
90.9236
55735522
100.0000
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
65.3856
51.5789
89.2857
85.3018
49465062
33.3333
ckim-isaacINDELI16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
64.6154
48.8372
95.4545
66.4122
42444222
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
69.0423
55.5556
91.1765
83.6145
60486262
33.3333
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
67.0732
55.5556
84.6154
78.3333
1081122
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
78.7919
68.5714
92.5926
64.4737
24112522
100.0000
ckim-isaacINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
64.1449
48.2759
95.5556
76.5625
42454322
100.0000