PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57401-57450 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | homalt | 98.1818 | 100.0000 | 96.4286 | 97.2305 | 25 | 0 | 54 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 63.6364 | 96.3333 | 0 | 0 | 7 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 66.6667 | 93.2331 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 60.0000 | 96.1240 | 0 | 0 | 6 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 60.0000 | 96.1240 | 0 | 0 | 6 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 70.0000 | 92.5373 | 0 | 0 | 7 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 37.5000 | 90.5882 | 0 | 0 | 3 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 20.0000 | 89.5833 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 93.9227 | 0 | 0 | 12 | 10 | 2 | 20.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 63.6364 | 94.3590 | 0 | 0 | 14 | 8 | 2 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 95.7627 | 0 | 0 | 36 | 9 | 2 | 22.2222 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 70.0000 | 93.8272 | 0 | 0 | 7 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.2105 | 96.6071 | 0 | 0 | 32 | 6 | 2 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.8485 | 96.8116 | 0 | 0 | 28 | 5 | 2 | 40.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 20.0000 | 95.5357 | 0 | 0 | 1 | 4 | 2 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 94.2308 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7975 | 99.7110 | 99.8843 | 36.2126 | 1725 | 5 | 1726 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 34.4624 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.2963 | 95.7364 | 96.8627 | 87.5245 | 247 | 11 | 247 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 96.0938 | 97.6190 | 94.6154 | 90.3274 | 123 | 3 | 123 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 96.1832 | 95.4545 | 96.9231 | 88.0624 | 252 | 12 | 252 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 90.6750 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 96.1468 | 95.2727 | 97.0370 | 87.9086 | 262 | 13 | 262 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 90.5802 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | * | 97.7320 | 97.4460 | 98.0198 | 85.5879 | 496 | 13 | 495 | 10 | 2 | 20.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_siren | het | 97.6859 | 98.2143 | 97.1631 | 87.7445 | 275 | 5 | 274 | 8 | 2 | 25.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 97.8993 | 96.4179 | 99.4269 | 69.1424 | 323 | 12 | 347 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.8025 | 94.1748 | 97.4874 | 88.3830 | 194 | 12 | 194 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.7273 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.3738 | 95.1973 | 99.6522 | 66.4723 | 555 | 28 | 573 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.4450 | 95.2959 | 99.6933 | 71.1249 | 628 | 31 | 650 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4132 | 89.6552 | 97.5000 | 85.2399 | 78 | 9 | 78 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.2384 | 92.4812 | 98.1651 | 88.0482 | 123 | 10 | 107 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.7596 | 92.3754 | 99.4012 | 59.5152 | 315 | 26 | 332 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.0290 | 92.4528 | 97.7528 | 87.1573 | 98 | 8 | 87 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.0450 | 93.0070 | 99.2883 | 56.0250 | 266 | 20 | 279 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.6277 | 95.1220 | 98.1818 | 88.6246 | 234 | 12 | 216 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0678 | 92.8947 | 99.4652 | 64.2789 | 353 | 27 | 372 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.4450 | 95.2959 | 99.6933 | 71.1249 | 628 | 31 | 650 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 95.7511 | 92.4731 | 99.2701 | 67.4197 | 258 | 21 | 272 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.7122 | 93.6170 | 95.8333 | 81.2500 | 44 | 3 | 46 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 90.1639 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3638 | 94.8948 | 99.9647 | 39.6673 | 5595 | 301 | 5656 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 77.5541 | 1356 | 7 | 1356 | 4 | 2 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 76.0359 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0210 | 94.2544 | 99.9549 | 27.4378 | 4380 | 267 | 4433 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6126 | 95.3835 | 99.9483 | 25.9281 | 3843 | 186 | 3869 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.9791 | 94.1744 | 99.9560 | 31.2217 | 4494 | 278 | 4547 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3638 | 94.8948 | 99.9647 | 39.6673 | 5595 | 301 | 5656 | 2 | 2 | 100.0000 | |