PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57351-57400 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5232 | 97.6987 | 99.3617 | 74.5533 | 467 | 11 | 467 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.0846 | 98.4716 | 99.7052 | 68.3462 | 1353 | 21 | 1353 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.4013 | 92.5651 | 94.2529 | 71.0322 | 249 | 20 | 246 | 15 | 2 | 13.3333 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4743 | 92.1659 | 99.0291 | 42.7778 | 200 | 17 | 204 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.5646 | 99.0385 | 98.0952 | 80.8743 | 206 | 2 | 206 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.1321 | 99.2278 | 99.0366 | 81.5237 | 514 | 4 | 514 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1533 | 99.2467 | 99.0602 | 83.0249 | 527 | 4 | 527 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.1674 | 99.2593 | 99.0758 | 83.1779 | 536 | 4 | 536 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m0_e0 | * | 97.9066 | 98.0645 | 97.7492 | 88.9363 | 304 | 6 | 304 | 7 | 2 | 28.5714 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | * | 98.7342 | 98.6747 | 98.7937 | 86.0391 | 819 | 11 | 819 | 10 | 2 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e0 | * | 98.7150 | 98.5998 | 98.8304 | 87.2578 | 845 | 12 | 845 | 10 | 2 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e1 | * | 98.7342 | 98.6207 | 98.8479 | 87.4221 | 858 | 12 | 858 | 10 | 2 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | * | 97.1429 | 96.5909 | 97.7011 | 92.2529 | 170 | 6 | 170 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m1_e0 | * | 98.3218 | 98.4190 | 98.2249 | 89.3800 | 498 | 8 | 498 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3638 | 98.4586 | 98.2692 | 90.4535 | 511 | 8 | 511 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4008 | 98.4934 | 98.3083 | 90.5304 | 523 | 8 | 523 | 9 | 2 | 22.2222 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | het | 98.8677 | 98.6913 | 99.0448 | 81.1755 | 1659 | 22 | 1659 | 16 | 2 | 12.5000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6131 | 93.8272 | 97.4684 | 73.9274 | 76 | 5 | 77 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.9577 | 91.6667 | 94.2857 | 75.0000 | 33 | 3 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.8333 | 94.9153 | 98.8304 | 69.3548 | 168 | 9 | 169 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.9866 | 93.8017 | 98.2759 | 65.1652 | 227 | 15 | 228 | 4 | 2 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3782 | 94.1935 | 98.6667 | 81.3665 | 146 | 9 | 148 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0097 | 97.9592 | 96.0784 | 82.1678 | 48 | 1 | 49 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | * | 95.0226 | 92.1053 | 98.1308 | 84.4477 | 105 | 9 | 105 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1111 | 92.2414 | 98.1651 | 85.7516 | 107 | 9 | 107 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | * | 94.6903 | 92.2414 | 97.2727 | 85.9335 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | hetalt | 90.3704 | 84.7222 | 96.8254 | 79.8077 | 61 | 11 | 61 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5782 | 99.3986 | 99.7586 | 57.7309 | 2479 | 15 | 2479 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 78.5714 | 94.2857 | 95.4368 | 33 | 9 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7071 | 99.5105 | 99.9045 | 32.0412 | 7319 | 36 | 7321 | 7 | 2 | 28.5714 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6200 | 99.3718 | 99.8694 | 32.0414 | 4587 | 29 | 4588 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5783 | 99.7296 | 99.4274 | 58.3882 | 2951 | 8 | 2952 | 17 | 2 | 11.7647 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5478 | 99.4890 | 99.6066 | 49.0683 | 2531 | 13 | 2532 | 10 | 2 | 20.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5246 | 99.3671 | 99.6825 | 48.0883 | 1570 | 10 | 1570 | 5 | 2 | 40.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8153 | 99.7048 | 99.9260 | 44.7261 | 4053 | 12 | 4053 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | homalt | 99.1945 | 98.8532 | 99.5381 | 90.7121 | 431 | 5 | 431 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | ti | segdup | het | 99.5306 | 99.5927 | 99.4687 | 89.2156 | 11981 | 49 | 11981 | 64 | 2 | 3.1250 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5857 | 99.4940 | 99.6776 | 63.2345 | 2163 | 11 | 2164 | 7 | 2 | 28.5714 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4951 | 99.4232 | 99.5671 | 63.4301 | 1379 | 8 | 1380 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 97.5081 | 95.9488 | 99.1189 | 81.2706 | 450 | 19 | 450 | 4 | 2 | 50.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 86.0759 | 80.9524 | 91.8919 | 88.7195 | 34 | 8 | 34 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.6615 | 99.4147 | 99.9095 | 69.6595 | 2208 | 13 | 2208 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | het | 97.4268 | 95.9790 | 98.9189 | 91.9902 | 549 | 23 | 549 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.4138 | 99.0654 | 99.7647 | 86.4065 | 848 | 8 | 848 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.4647 | 99.1462 | 99.7852 | 87.5551 | 929 | 8 | 929 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.4698 | 99.1543 | 99.7872 | 87.6462 | 938 | 8 | 938 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | segdup | het | 99.4044 | 99.4326 | 99.3762 | 90.4305 | 5257 | 30 | 5257 | 33 | 2 | 6.0606 | |
| eyeh-varpipe | INDEL | * | decoy | het | 63.4921 | 50.0000 | 86.9565 | 99.7259 | 3 | 3 | 20 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | hetalt | 58.2726 | 42.4242 | 93.0233 | 93.1746 | 14 | 19 | 40 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | het | 95.3582 | 96.2264 | 94.5055 | 96.7254 | 51 | 2 | 86 | 5 | 2 | 40.0000 | |