PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56901-56950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | * | 82.6772 | 77.7778 | 88.2353 | 90.7104 | 14 | 4 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | func_cds | * | 98.4442 | 98.7421 | 98.1481 | 31.3559 | 157 | 2 | 159 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | func_cds | het | 98.3051 | 100.0000 | 96.6667 | 34.3066 | 85 | 0 | 87 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 98.2249 | 99.6798 | 0 | 0 | 166 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | * | 89.4737 | 89.4737 | 89.4737 | 42.4242 | 17 | 2 | 17 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | tech_badpromoters | homalt | 90.0000 | 100.0000 | 81.8182 | 26.6667 | 9 | 0 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 54.6624 | 38.4615 | 94.4444 | 73.7226 | 15 | 24 | 34 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 69.2308 | 54.5455 | 94.7368 | 83.3333 | 18 | 15 | 36 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 59.4595 | 45.8333 | 84.6154 | 35.0000 | 11 | 13 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | het | 95.2276 | 96.5517 | 93.9394 | 90.5714 | 28 | 1 | 31 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e0 | * | 89.3697 | 86.3636 | 92.5926 | 95.3287 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l250_m2_e1 | * | 89.3697 | 86.3636 | 92.5926 | 95.4082 | 19 | 3 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 32.0000 | 20.0000 | 80.0000 | 67.7419 | 7 | 28 | 8 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 58.3333 | 43.7500 | 87.5000 | 60.9756 | 7 | 9 | 14 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 71.4286 | 0 | 59 | 2 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 42.8571 | 0 | 4 | 1 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 25.0000 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 33.3333 | 94.7368 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 2 | 2 | 100.0000 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m1_e0 | het | 34.9515 | 22.2222 | 81.8182 | 64.5161 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e0 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l100_m2_e1 | het | 34.9515 | 22.2222 | 81.8182 | 68.5714 | 4 | 14 | 9 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | func_cds | * | 98.6417 | 98.8889 | 98.3957 | 28.6260 | 178 | 2 | 184 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5394 | 98.5075 | 98.5714 | 90.5914 | 66 | 1 | 138 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m0_e0 | het | 96.6667 | 100.0000 | 93.5484 | 96.7876 | 15 | 0 | 29 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.4795 | 97.7778 | 97.1831 | 95.5514 | 44 | 1 | 69 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.5232 | 97.8261 | 97.2222 | 95.6311 | 45 | 1 | 70 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | hetalt | 65.0004 | 49.1071 | 96.1039 | 90.3266 | 55 | 57 | 74 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.4676 | 51.9231 | 96.2963 | 59.0909 | 27 | 25 | 52 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 88.2353 | 0 | 9 | 0 | 2 | 2 | 100.0000 | ||
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 98.7441 | 0 | 0 | 6 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 9.9792 | 5.2980 | 85.7143 | 70.0000 | 8 | 143 | 18 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | I6_15 | map_l100_m0_e0 | homalt | 87.7193 | 83.3333 | 92.5926 | 82.0000 | 10 | 2 | 25 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m0_e0 | het | 74.7253 | 66.6667 | 85.0000 | 84.1270 | 6 | 3 | 17 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3576 | 79.3103 | 97.2222 | 72.2008 | 69 | 18 | 70 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.3404 | 60.7143 | 89.4737 | 90.1042 | 17 | 11 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 89.6396 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.0862 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.3529 | 75.0000 | 91.3043 | 90.1709 | 21 | 7 | 21 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | het | 87.4904 | 81.0811 | 95.0000 | 89.3899 | 30 | 7 | 38 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.3162 | 82.6087 | 92.5926 | 73.5294 | 57 | 12 | 25 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.6879 | 91.8919 | 95.5556 | 85.9375 | 68 | 6 | 43 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.1863 | 98.9160 | 99.4580 | 80.5789 | 365 | 4 | 367 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.6832 | 96.5368 | 98.8571 | 39.8625 | 446 | 16 | 173 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m1_e0 | het | 97.4816 | 97.2705 | 97.6936 | 82.4440 | 1176 | 33 | 1186 | 28 | 2 | 7.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l100_m2_e0 | het | 97.5348 | 97.2930 | 97.7778 | 83.2980 | 1222 | 34 | 1232 | 28 | 2 | 7.1429 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m1_e0 | * | 97.7461 | 97.7022 | 97.7901 | 86.2288 | 1063 | 25 | 1062 | 24 | 2 | 8.3333 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.1379 | 98.8539 | 99.4236 | 87.3818 | 345 | 4 | 345 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8099 | 97.7253 | 97.8947 | 86.9699 | 1117 | 26 | 1116 | 24 | 2 | 8.3333 | |