PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56801-56850 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.2587 | 95.3704 | 99.2233 | 74.6305 | 515 | 25 | 511 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_siren | homalt | 96.9037 | 94.3069 | 99.6476 | 66.3105 | 1143 | 69 | 1131 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | * | 82.9268 | 77.2727 | 89.4737 | 53.6585 | 17 | 5 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 60.0000 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.5897 | 28.8136 | 89.4737 | 70.7692 | 17 | 42 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 64.6690 | 47.9326 | 99.3631 | 60.5528 | 313 | 340 | 312 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.4762 | 0 | 24 | 0 | 2 | 2 | 100.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.8075 | 60.0000 | 86.3636 | 87.9781 | 21 | 14 | 19 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | het | 61.5385 | 100.0000 | 44.4444 | 96.2185 | 4 | 0 | 4 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | * | 63.1579 | 75.0000 | 54.5455 | 96.1404 | 6 | 2 | 6 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | * | 63.1579 | 75.0000 | 54.5455 | 96.2963 | 6 | 2 | 6 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 96.2825 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 69.6970 | 56.0976 | 92.0000 | 93.0939 | 23 | 18 | 23 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.9430 | 86.9565 | 95.3125 | 86.7495 | 60 | 9 | 61 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.9379 | 89.0339 | 99.4135 | 76.1872 | 341 | 42 | 339 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2222 | 98.5461 | 99.9076 | 38.9281 | 2169 | 32 | 2163 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.0609 | 96.5649 | 99.6040 | 59.4051 | 506 | 18 | 503 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.9493 | 87.1795 | 99.5370 | 80.2016 | 442 | 65 | 430 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 96.9782 | 94.3258 | 99.7842 | 76.6072 | 1413 | 85 | 1387 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0131 | 98.1219 | 99.9207 | 56.5287 | 3814 | 73 | 3779 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.6463 | 80.5556 | 84.8485 | 92.3788 | 29 | 7 | 28 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | homalt | 97.1129 | 95.8549 | 98.4043 | 93.6955 | 185 | 8 | 185 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | * | func_cds | hetalt | 42.8571 | 60.0000 | 33.3333 | 57.1429 | 3 | 2 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 35.2764 | 21.7742 | 92.8571 | 99.9803 | 27 | 97 | 26 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 29.6296 | 19.0476 | 66.6667 | 99.9901 | 4 | 17 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | hetalt | 60.7460 | 57.5758 | 64.2857 | 94.2857 | 19 | 14 | 9 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | * | segdup | hetalt | 81.3718 | 74.6154 | 89.4737 | 97.2915 | 97 | 33 | 34 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | * | 78.7330 | 75.0000 | 82.8571 | 54.8387 | 57 | 19 | 58 | 12 | 2 | 16.6667 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | homalt | 92.3077 | 90.9091 | 93.7500 | 53.6232 | 30 | 3 | 30 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 71.9626 | 60.6299 | 88.5057 | 86.8976 | 77 | 50 | 77 | 10 | 2 | 20.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8580 | 58.1818 | 93.9394 | 76.9231 | 32 | 23 | 31 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 92.6924 | 86.8805 | 99.3377 | 58.4022 | 298 | 45 | 300 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 89.1429 | 81.2500 | 98.7342 | 66.3830 | 156 | 36 | 156 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9339 | 77.1098 | 99.6266 | 47.5519 | 1334 | 396 | 1334 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 91.7821 | 85.1027 | 99.5992 | 26.0741 | 497 | 87 | 497 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 38.9486 | 24.4745 | 95.3216 | 91.4756 | 163 | 503 | 163 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.1450 | 34.5361 | 98.5294 | 84.0936 | 134 | 254 | 134 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | * | 46.9565 | 31.3953 | 93.1034 | 90.6149 | 27 | 59 | 27 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_siren | homalt | 56.2500 | 42.8571 | 81.8182 | 84.2857 | 9 | 12 | 9 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.8108 | 78.3843 | 99.8145 | 76.5550 | 1077 | 297 | 1076 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 77.6923 | 63.9241 | 99.0196 | 81.1460 | 202 | 114 | 202 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 63.8821 | 48.3271 | 94.2029 | 88.6792 | 130 | 139 | 130 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 68.0723 | 52.0737 | 98.2609 | 59.9303 | 113 | 104 | 113 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 68.7772 | 52.7619 | 98.7522 | 77.3150 | 554 | 496 | 554 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | * | 79.6064 | 66.4675 | 99.2196 | 91.7555 | 890 | 449 | 890 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | * | 79.7551 | 66.6667 | 99.2383 | 92.3930 | 912 | 456 | 912 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | * | 80.0171 | 67.0251 | 99.2569 | 92.4026 | 935 | 460 | 935 | 7 | 2 | 28.5714 | |