PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56501-56550 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | het | 40.0000 | 50.0000 | 33.3333 | 66.6667 | 1 | 1 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3233 | 60.7843 | 72.9730 | 93.0057 | 31 | 20 | 27 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.0874 | 96.1538 | 98.0392 | 75.1523 | 200 | 8 | 200 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | homalt | 97.5232 | 96.3303 | 98.7461 | 78.3582 | 315 | 12 | 315 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | homalt | 97.2010 | 96.4646 | 97.9487 | 82.7586 | 191 | 7 | 191 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | homalt | 97.2431 | 96.5174 | 97.9798 | 85.0114 | 194 | 7 | 194 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e1 | homalt | 97.2840 | 96.5686 | 98.0100 | 85.1661 | 197 | 7 | 197 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 81.0056 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 50.0000 | 44.4444 | 57.1429 | 96.9957 | 4 | 5 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | * | 53.3333 | 50.0000 | 57.1429 | 96.8326 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l150_m0_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.3958 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | * | 46.1538 | 42.8571 | 50.0000 | 97.7358 | 3 | 4 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m1_e0 | het | 44.4444 | 50.0000 | 40.0000 | 97.8541 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | * | 53.3333 | 50.0000 | 57.1429 | 97.7049 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e0 | het | 54.5455 | 60.0000 | 50.0000 | 97.7941 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | * | 53.3333 | 50.0000 | 57.1429 | 97.7987 | 4 | 4 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I6_15 | map_l250_m2_e1 | het | 54.5455 | 60.0000 | 50.0000 | 97.8873 | 3 | 2 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | SNP | * | func_cds | het | 99.3937 | 99.8746 | 98.9174 | 34.8349 | 11147 | 14 | 11147 | 122 | 2 | 1.6393 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.1609 | 80.9524 | 75.5556 | 97.2477 | 34 | 8 | 34 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 74.0741 | 64.5161 | 97.5180 | 20 | 7 | 20 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | map_l250_m0_e0 | homalt | 97.0827 | 95.2305 | 99.0083 | 93.3038 | 599 | 30 | 599 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | * | 96.5732 | 98.7261 | 94.5122 | 54.3175 | 155 | 2 | 155 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | SNP | ti | func_cds | het | 99.5080 | 99.8942 | 99.1249 | 31.7349 | 8495 | 9 | 8495 | 75 | 2 | 2.6667 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | homalt | 97.7830 | 96.1009 | 99.5249 | 92.4308 | 419 | 17 | 419 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | SNP | ti | segdup | het | 97.4023 | 99.5594 | 95.3366 | 92.6943 | 11977 | 53 | 11980 | 586 | 2 | 0.3413 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 63.7991 | 90.6900 | 49.2081 | 87.2696 | 828 | 85 | 870 | 898 | 2 | 0.2227 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 90.3835 | 96.3083 | 85.1454 | 76.8607 | 2974 | 114 | 3015 | 526 | 2 | 0.3802 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.3252 | 90.4762 | 72.2222 | 91.7808 | 38 | 4 | 39 | 15 | 2 | 13.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 92.1569 | 6 | 0 | 6 | 6 | 2 | 33.3333 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.5460 | 95.7831 | 99.3750 | 80.3319 | 1272 | 56 | 1272 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.9045 | 95.9136 | 99.9799 | 60.6514 | 14787 | 630 | 14905 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1793 | 98.7333 | 99.6293 | 74.5125 | 2962 | 38 | 2956 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7612 | 99.6819 | 99.8407 | 71.1771 | 1880 | 6 | 1880 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6600 | 95.4525 | 99.9719 | 30.6839 | 10600 | 505 | 10680 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6959 | 95.5227 | 99.9703 | 33.3773 | 10006 | 469 | 10089 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 99.9071 | 99.9071 | 44.1619 | 2150 | 2 | 2150 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.5165 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 50.5051 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m0_e0 | het | 97.2294 | 96.1802 | 98.3017 | 84.1086 | 982 | 39 | 984 | 17 | 2 | 11.7647 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 4.6004 | 2.3747 | 73.3333 | 89.3617 | 9 | 370 | 11 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 3.9487 | 2.0305 | 71.4286 | 91.6667 | 4 | 193 | 5 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | homalt | 59.7285 | 45.8333 | 85.7143 | 82.2785 | 11 | 13 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | homalt | 59.4059 | 44.1176 | 90.9091 | 79.0476 | 15 | 19 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | homalt | 59.7865 | 44.4444 | 91.3043 | 78.7037 | 16 | 20 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | homalt | 58.6900 | 43.2432 | 91.3043 | 78.8991 | 16 | 21 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | * | 0.0000 | 0.0000 | 60.0000 | 61.5385 | 0 | 12 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | het | 0.0000 | 0.0000 | 60.0000 | 58.3333 | 0 | 9 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 55.5556 | 0 | 122 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 29.6296 | 18.1818 | 80.0000 | 78.5714 | 2 | 9 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 38.0952 | 25.0000 | 80.0000 | 78.2609 | 2 | 6 | 12 | 3 | 2 | 66.6667 | |