PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56451-56500 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | segdup | het | 94.5277 | 98.9768 | 90.4613 | 96.5263 | 1451 | 15 | 1451 | 153 | 2 | 1.3072 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3890 | 97.1354 | 97.6440 | 85.9662 | 373 | 11 | 373 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.6757 | 99.7835 | 99.5680 | 64.0528 | 461 | 1 | 461 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3742 | 99.4987 | 99.2500 | 65.9284 | 397 | 2 | 397 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.7576 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | het | 73.2695 | 94.4056 | 59.8662 | 94.2393 | 540 | 32 | 537 | 360 | 2 | 0.5556 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | homalt | 96.8254 | 94.8187 | 98.9189 | 93.7500 | 183 | 10 | 183 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | SNP | tv | map_l250_m1_e0 | homalt | 96.5675 | 93.6916 | 99.6255 | 87.3500 | 802 | 54 | 798 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e0 | homalt | 96.5358 | 93.7033 | 99.5449 | 88.1007 | 878 | 59 | 875 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | SNP | tv | map_l250_m2_e1 | homalt | 96.5134 | 93.6575 | 99.5490 | 88.2016 | 886 | 60 | 883 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 94.7040 | 92.6829 | 96.8153 | 91.0541 | 152 | 12 | 152 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.4579 | 91.7431 | 95.2381 | 94.3760 | 100 | 9 | 100 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 93.8053 | 92.1739 | 95.4955 | 94.7243 | 106 | 9 | 106 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e1 | homalt | 93.8596 | 92.2414 | 95.5357 | 94.7955 | 107 | 9 | 107 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7705 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.6047 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7395 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.5646 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.8451 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | * | 70.1754 | 71.4286 | 68.9655 | 98.1611 | 20 | 8 | 20 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l100_m0_e0 | het | 72.7273 | 84.2105 | 64.0000 | 97.6460 | 16 | 3 | 16 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 81.4815 | 81.4815 | 81.4815 | 98.2330 | 22 | 5 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.3636 | 95.0000 | 79.1667 | 97.6471 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 81.4815 | 81.4815 | 81.4815 | 98.2922 | 22 | 5 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | het | 86.3636 | 95.0000 | 79.1667 | 97.7528 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.0000 | 78.5714 | 81.4815 | 98.3019 | 22 | 6 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | het | 86.3636 | 95.0000 | 79.1667 | 97.7716 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | homalt | 94.8819 | 93.4109 | 96.4000 | 79.4069 | 241 | 17 | 241 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m1_e0 | homalt | 95.1473 | 92.7365 | 97.6868 | 77.2562 | 549 | 43 | 549 | 13 | 2 | 15.3846 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.2066 | 92.9032 | 97.6271 | 78.5766 | 576 | 44 | 576 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | * | 75.6757 | 91.3043 | 64.6154 | 97.7586 | 42 | 4 | 42 | 23 | 2 | 8.6957 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m0_e0 | het | 71.2644 | 93.9394 | 57.4074 | 97.8296 | 31 | 2 | 31 | 23 | 2 | 8.6957 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 97.9522 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.5904 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 7.1006 | 3.7267 | 75.0000 | 81.8182 | 6 | 155 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3778 | 78.3784 | 93.7500 | 77.9310 | 58 | 16 | 60 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 89.0909 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 66.6667 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 98.3051 | 0 | 3 | 0 | 2 | 2 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 70.3704 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | * | 72.7273 | 72.7273 | 72.7273 | 82.8125 | 8 | 3 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l100_m0_e0 | het | 84.2105 | 100.0000 | 72.7273 | 81.0345 | 8 | 0 | 8 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 86.6667 | 3 | 3 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l125_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 84.6154 | 3 | 0 | 3 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | * | 44.4444 | 50.0000 | 40.0000 | 86.4865 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | map_l150_m0_e0 | het | 57.1429 | 100.0000 | 40.0000 | 84.8485 | 2 | 0 | 2 | 3 | 2 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | tech_badpromoters | * | 28.5714 | 25.0000 | 33.3333 | 70.0000 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |