PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56251-56300 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0403 | 98.2857 | 99.8066 | 60.5344 | 1032 | 18 | 1032 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5507 | 98.7097 | 98.3923 | 87.2069 | 306 | 4 | 306 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.9945 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 99.2158 | 99.0361 | 99.3961 | 84.2466 | 822 | 8 | 823 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.7780 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 99.1816 | 98.9498 | 99.4145 | 85.5524 | 848 | 9 | 849 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 83.2522 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 99.1939 | 98.9655 | 99.4233 | 85.7143 | 861 | 9 | 862 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5317 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 98.0057 | 97.7273 | 98.2857 | 90.7846 | 172 | 4 | 172 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.5676 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 98.9129 | 98.8142 | 99.0119 | 87.8511 | 500 | 6 | 501 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 85.5603 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 98.8426 | 98.6513 | 99.0347 | 89.1016 | 512 | 7 | 513 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 87.3449 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 98.8688 | 98.6817 | 99.0566 | 89.1616 | 524 | 7 | 525 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 87.4469 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 96.6825 | 96.2264 | 97.1429 | 95.3146 | 102 | 4 | 102 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 93.3237 | 44 | 0 | 44 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 96.8889 | 96.4602 | 97.3214 | 95.7656 | 109 | 4 | 109 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 94.2822 | 45 | 0 | 45 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 96.9163 | 96.4912 | 97.3451 | 95.8684 | 110 | 4 | 110 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 94.3396 | 46 | 0 | 46 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | segdup | * | 99.3377 | 99.1501 | 99.5261 | 94.0200 | 1050 | 9 | 1050 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | segdup | homalt | 99.5772 | 99.5772 | 99.5772 | 92.5135 | 471 | 2 | 471 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1490 | 92.7126 | 97.7169 | 78.3168 | 229 | 18 | 214 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0935 | 93.2886 | 96.9697 | 75.4647 | 139 | 10 | 128 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 92.1348 | 89.1304 | 95.3488 | 68.1481 | 41 | 5 | 41 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | * | 92.7526 | 94.4056 | 91.1565 | 94.8923 | 135 | 8 | 134 | 13 | 2 | 15.3846 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | het | 92.3788 | 96.1538 | 88.8889 | 96.1410 | 75 | 3 | 72 | 9 | 2 | 22.2222 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 97.0113 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | het | 93.3333 | 100.0000 | 87.5000 | 97.4260 | 37 | 0 | 35 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2248 | 99.2248 | 99.2248 | 63.9161 | 256 | 2 | 256 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7833 | 99.8915 | 99.6753 | 78.2895 | 921 | 1 | 921 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 78.0409 | 545 | 1 | 545 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7175 | 99.6237 | 99.8115 | 81.3892 | 1059 | 4 | 1059 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 81.9280 | 69.6538 | 99.4536 | 27.2366 | 342 | 149 | 364 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.2381 | 93.3333 | 97.2222 | 64.3564 | 70 | 5 | 70 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 59.4595 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 83.8384 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.1511 | 98.6486 | 99.6587 | 83.2763 | 584 | 8 | 584 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.1776 | 98.6907 | 99.6694 | 83.8924 | 603 | 8 | 603 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.1896 | 98.7097 | 99.6743 | 83.9687 | 612 | 8 | 612 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 87.1166 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.8473 | 98.2808 | 99.4203 | 85.4859 | 343 | 6 | 343 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.8950 | 98.3516 | 99.4444 | 86.2385 | 358 | 6 | 358 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.9189 | 98.3871 | 99.4565 | 86.2224 | 366 | 6 | 366 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.5801 | 97.9839 | 99.1837 | 88.3666 | 243 | 5 | 243 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | * | 96.8249 | 99.3654 | 94.4110 | 96.0107 | 1096 | 7 | 1098 | 65 | 2 | 3.0769 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.5203 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |