PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56101-56150 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | het | 96.5578 | 93.5647 | 99.7488 | 79.9395 | 2777 | 191 | 2780 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | het | 96.8039 | 94.0074 | 99.7719 | 81.1683 | 3059 | 195 | 3062 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | het | 96.8015 | 94.0285 | 99.7430 | 81.3425 | 3102 | 197 | 3105 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | ti | map_siren | hetalt | 98.2759 | 100.0000 | 96.6102 | 66.2857 | 57 | 0 | 57 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.2748 | 97.9551 | 96.6038 | 68.7500 | 1485 | 31 | 1536 | 54 | 2 | 3.7037 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.2536 | 97.6815 | 94.8669 | 70.7534 | 969 | 23 | 998 | 54 | 2 | 3.7037 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7967 | 99.6732 | 99.9204 | 57.8106 | 10064 | 33 | 10047 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.6792 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4211 | 99.0527 | 99.7923 | 61.9326 | 4810 | 46 | 4804 | 10 | 2 | 20.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.4316 | 99.1580 | 99.7066 | 64.6054 | 3062 | 26 | 3059 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2906 | 99.5974 | 98.9856 | 37.6602 | 7422 | 30 | 7416 | 76 | 2 | 2.6316 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6037 | 99.7194 | 99.4884 | 35.8783 | 2132 | 6 | 2139 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | homalt | 99.7918 | 99.7140 | 99.8697 | 63.2094 | 3835 | 11 | 3833 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | homalt | 99.8478 | 99.7466 | 99.9492 | 70.2200 | 3936 | 10 | 3937 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | homalt | 99.8529 | 99.7551 | 99.9509 | 72.6094 | 4073 | 10 | 4074 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | homalt | 99.8426 | 99.7339 | 99.9516 | 72.6103 | 4123 | 11 | 4127 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | het | 96.2660 | 93.0610 | 99.6997 | 76.8718 | 1663 | 124 | 1660 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | het | 96.4634 | 93.5052 | 99.6150 | 78.6168 | 1814 | 126 | 1811 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | het | 96.5098 | 93.5878 | 99.6202 | 78.7624 | 1839 | 126 | 1836 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.3468 | 95.0887 | 99.7147 | 63.4324 | 697 | 36 | 699 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2259 | 98.5684 | 99.8923 | 66.7145 | 1859 | 27 | 1855 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2954 | 98.8082 | 99.7875 | 49.1626 | 912 | 11 | 939 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | * | 97.1053 | 95.5214 | 98.7426 | 78.1490 | 1493 | 70 | 1492 | 19 | 2 | 10.5263 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | homalt | 98.5147 | 97.8389 | 99.2000 | 76.5368 | 498 | 11 | 496 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | het | 97.4629 | 96.2864 | 98.6685 | 76.9451 | 2152 | 83 | 2149 | 29 | 2 | 6.8966 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | homalt | 98.6835 | 97.7180 | 99.6683 | 77.1071 | 1199 | 28 | 1202 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | homalt | 98.6382 | 97.6209 | 99.6769 | 78.6515 | 1231 | 30 | 1234 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e1 | homalt | 98.6597 | 97.6581 | 99.6820 | 78.7966 | 1251 | 30 | 1254 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | het | 98.0316 | 97.4490 | 98.6212 | 76.8583 | 4393 | 115 | 4363 | 61 | 2 | 3.2787 | |
| ltrigg-rtg2 | INDEL | * | map_siren | hetalt | 94.4986 | 90.2834 | 99.1266 | 91.2895 | 223 | 24 | 227 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | het | 98.6970 | 98.5675 | 98.8268 | 93.0098 | 1445 | 21 | 1432 | 17 | 2 | 11.7647 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 84.6154 | 96.1367 | 0 | 0 | 22 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 60.0000 | 89.3617 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.6684 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 95.8060 | 0 | 0 | 30 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.5714 | 96.2766 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.5926 | 95.3846 | 0 | 0 | 25 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 89.6552 | 95.8865 | 0 | 0 | 26 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 78.5714 | 96.2766 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | het | 88.0848 | 88.8889 | 87.2951 | 96.3468 | 8 | 1 | 426 | 62 | 2 | 3.2258 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | het | 91.6047 | 85.7143 | 98.3645 | 86.9869 | 6 | 1 | 421 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.0000 | 95.1737 | 0 | 0 | 21 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 97.9592 | 95.9184 | 0 | 0 | 96 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 97.9592 | 95.9184 | 0 | 0 | 96 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 60.0000 | 95.2830 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 98.1132 | 93.2138 | 0 | 0 | 156 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | * | 99.2126 | 100.0000 | 98.4375 | 83.7150 | 4 | 0 | 378 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.9310 | 86.3078 | 0 | 0 | 142 | 3 | 2 | 66.6667 | |