PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56001-56050 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 56.8303 | 39.7366 | 99.7333 | 37.6559 | 724 | 1098 | 748 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 81.8182 | 81.8182 | 81.8182 | 99.0886 | 9 | 2 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1667 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 33.3333 | 99.9973 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 33.3333 | 99.9675 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.0062 | 74.2424 | 99.4203 | 29.8780 | 343 | 119 | 343 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l125_m0_e0 | het | 61.6561 | 45.2174 | 96.8750 | 79.2746 | 156 | 189 | 155 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e0 | het | 96.7120 | 94.3650 | 99.1788 | 77.1166 | 2177 | 130 | 2174 | 18 | 2 | 11.1111 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | het | 96.7209 | 94.4516 | 99.1019 | 77.2848 | 2213 | 130 | 2207 | 20 | 2 | 10.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | * | 95.9750 | 93.1973 | 98.9234 | 83.1757 | 822 | 60 | 827 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m0_e0 | homalt | 98.9449 | 99.2958 | 98.5965 | 86.3047 | 282 | 2 | 281 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | * | 95.2820 | 92.2179 | 98.5567 | 87.0112 | 474 | 40 | 478 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | homalt | 99.0881 | 99.3902 | 98.7879 | 89.8148 | 163 | 1 | 163 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | segdup | het | 98.2095 | 97.4761 | 98.9540 | 92.5626 | 1429 | 37 | 1419 | 15 | 2 | 13.3333 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 88.0000 | 96.2853 | 0 | 0 | 22 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 60.0000 | 90.3846 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.7941 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 95.8170 | 0 | 0 | 30 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.5714 | 96.3918 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.5926 | 95.5150 | 0 | 0 | 25 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 89.6552 | 95.9778 | 0 | 0 | 26 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 78.5714 | 96.3918 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C1_5 | HG002complexvar | * | 91.9971 | 85.7143 | 99.2739 | 88.1471 | 6 | 1 | 957 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 82.6087 | 95.6023 | 0 | 0 | 19 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 97.8495 | 95.9740 | 0 | 0 | 91 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 97.8495 | 95.9740 | 0 | 0 | 91 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 60.0000 | 95.5357 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 97.9452 | 93.5654 | 0 | 0 | 143 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002complexvar | * | 99.3197 | 100.0000 | 98.6486 | 84.1134 | 4 | 0 | 365 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.7778 | 86.8677 | 0 | 0 | 132 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 95.9064 | 95.2710 | 0 | 0 | 164 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 95.8904 | 95.3115 | 0 | 0 | 70 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 95.9064 | 95.2710 | 0 | 0 | 164 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 95.8904 | 95.3115 | 0 | 0 | 70 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002complexvar | homalt | 96.9795 | 94.8097 | 99.2509 | 62.0739 | 274 | 15 | 265 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2737 | 91.9271 | 98.8732 | 77.2144 | 353 | 31 | 351 | 4 | 2 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.1158 | 93.6047 | 98.7654 | 70.5455 | 161 | 11 | 160 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6515 | 97.6942 | 99.6278 | 64.7727 | 805 | 19 | 803 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.1659 | 98.8920 | 99.4413 | 56.2882 | 357 | 4 | 356 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.6780 | 84.2520 | 98.1651 | 42.0213 | 107 | 20 | 107 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.2859 | 92.6829 | 98.0392 | 77.6316 | 152 | 12 | 150 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.9286 | 92.1569 | 97.8723 | 55.6604 | 94 | 8 | 92 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.7317 | 98.3139 | 99.1531 | 74.1059 | 1516 | 26 | 1522 | 13 | 2 | 15.3846 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0560 | 98.6830 | 99.4318 | 77.2512 | 1049 | 14 | 1050 | 6 | 2 | 33.3333 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6854 | 99.4272 | 99.9450 | 44.5461 | 3645 | 21 | 3633 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.1694 | 92.2078 | 96.2162 | 75.6258 | 355 | 30 | 356 | 14 | 2 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9949 | 98.9848 | 99.0050 | 58.8957 | 195 | 2 | 199 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3962 | 98.9698 | 99.8262 | 37.7685 | 4035 | 42 | 4020 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | * | 97.7114 | 95.8874 | 99.6061 | 77.1094 | 1772 | 76 | 1770 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5779 | 99.4932 | 99.6627 | 79.8505 | 589 | 3 | 591 | 2 | 2 | 100.0000 | |