PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55851-55900 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 44.4444 | 66.6667 | 99.0050 | 4 | 5 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 57.6052 | 40.6053 | 99.0909 | 37.5000 | 322 | 471 | 327 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 90.9091 | 95.2381 | 86.9565 | 50.0000 | 20 | 1 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 95.0495 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | * | 50.6787 | 38.8889 | 72.7273 | 93.4524 | 7 | 11 | 8 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.7447 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 2 | 4 | 2 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | * | 88.2353 | 88.2353 | 88.2353 | 54.0541 | 15 | 2 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | homalt | 85.7143 | 100.0000 | 75.0000 | 57.8947 | 6 | 0 | 6 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | hetalt | 71.7549 | 56.4179 | 98.5437 | 70.9450 | 189 | 146 | 203 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 49.2700 | 33.7209 | 91.4286 | 84.0909 | 29 | 57 | 32 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 90.4177 | 92.0000 | 88.8889 | 91.0596 | 23 | 2 | 24 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 70.8184 | 55.4286 | 98.0392 | 71.1864 | 97 | 78 | 100 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.9091 | 93.7500 | 88.2353 | 76.0563 | 15 | 1 | 15 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 63.6364 | 53.8462 | 77.7778 | 71.8750 | 7 | 6 | 7 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | * | 57.1429 | 54.5455 | 60.0000 | 86.1111 | 6 | 5 | 6 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m1_e0 | het | 76.4706 | 72.2222 | 81.2500 | 86.5546 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e0 | het | 76.4706 | 72.2222 | 81.2500 | 88.6525 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m2_e1 | het | 76.4706 | 72.2222 | 81.2500 | 88.8889 | 13 | 5 | 13 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | het | 62.5000 | 55.5556 | 71.4286 | 88.7097 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | het | 62.5000 | 55.5556 | 71.4286 | 89.7059 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | het | 62.5000 | 55.5556 | 71.4286 | 89.8551 | 5 | 4 | 5 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0506 | 91.1392 | 99.3127 | 70.7538 | 288 | 28 | 289 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m1_e0 | het | 58.8785 | 42.1405 | 97.6744 | 82.3529 | 126 | 173 | 126 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | het | 59.3258 | 42.7184 | 97.0588 | 85.5779 | 132 | 177 | 132 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | het | 59.5186 | 42.9022 | 97.1429 | 85.6704 | 136 | 181 | 136 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.4998 | 94.1176 | 96.9231 | 69.9074 | 64 | 4 | 63 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 55.5556 | 0.0000 | 95.4545 | 5 | 4 | 0 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 95.9592 | 95.9184 | 96.0000 | 82.4561 | 47 | 2 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 43.9242 | 28.4768 | 96.0000 | 65.0350 | 43 | 108 | 48 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 30.7692 | 66.6667 | 77.7778 | 4 | 9 | 4 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0.0000 | 84.6154 | 1 | 0 | 0 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | het | 73.2883 | 63.3333 | 86.9565 | 81.4516 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | het | 73.2883 | 63.3333 | 86.9565 | 84.6667 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | het | 73.2883 | 63.3333 | 86.9565 | 84.9673 | 19 | 11 | 20 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 93.0556 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | homalt | 50.0000 | 42.8571 | 60.0000 | 93.7500 | 3 | 4 | 3 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6267 | 97.7614 | 99.5075 | 53.2307 | 3843 | 88 | 3839 | 19 | 2 | 10.5263 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2696 | 94.2821 | 98.3427 | 70.1080 | 2968 | 180 | 2967 | 50 | 2 | 4.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 80.7834 | 70.9677 | 93.7500 | 90.7514 | 88 | 36 | 90 | 6 | 2 | 33.3333 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.0443 | 87.5315 | 94.8509 | 85.4150 | 695 | 99 | 700 | 38 | 2 | 5.2632 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8525 | 95.1101 | 98.6600 | 66.4833 | 2937 | 151 | 2945 | 40 | 2 | 5.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.2857 | 52.9412 | 81.8182 | 97.0667 | 9 | 8 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2146 | 96.7797 | 99.6928 | 37.8817 | 4538 | 151 | 4543 | 14 | 2 | 14.2857 | |
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | het | 69.7650 | 53.9859 | 98.5774 | 56.8653 | 8323 | 7094 | 8315 | 120 | 2 | 1.6667 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | het | 70.4610 | 54.8457 | 98.5073 | 60.6122 | 8653 | 7124 | 8645 | 131 | 2 | 1.5267 | |
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | het | 70.6499 | 55.0822 | 98.4842 | 60.7475 | 8779 | 7159 | 8771 | 135 | 2 | 1.4815 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | * | 93.7063 | 93.0556 | 94.3662 | 43.6508 | 67 | 5 | 67 | 4 | 2 | 50.0000 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | homalt | 95.0000 | 97.4359 | 92.6829 | 49.3827 | 38 | 1 | 38 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 84.4720 | 80.0000 | 89.4737 | 99.9564 | 16 | 4 | 17 | 2 | 2 | 100.0000 | |