PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55701-55750 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 81.2948 | 68.9150 | 99.0964 | 84.0614 | 235 | 106 | 329 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 81.4279 | 69.0962 | 99.1176 | 84.0450 | 237 | 106 | 337 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 75.7686 | 61.6162 | 98.3607 | 87.4486 | 122 | 76 | 180 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 75.8531 | 61.6915 | 98.4536 | 88.1055 | 124 | 77 | 191 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 76.2868 | 62.2549 | 98.4848 | 88.1508 | 127 | 77 | 195 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | segdup | het | 97.4851 | 97.5836 | 97.3868 | 95.7292 | 525 | 13 | 559 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | I6_15 | func_cds | het | 77.4194 | 100.0000 | 63.1579 | 33.3333 | 24 | 0 | 24 | 14 | 2 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 89.6574 | 81.4353 | 99.7264 | 37.3608 | 522 | 119 | 729 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 58.1704 | 48.0000 | 73.8095 | 94.1423 | 12 | 13 | 31 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m1_e0 | het | 59.2593 | 53.3333 | 66.6667 | 95.0549 | 8 | 7 | 18 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 58.8648 | 48.0000 | 76.0870 | 94.2284 | 12 | 13 | 35 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e0 | het | 59.2593 | 53.3333 | 66.6667 | 95.4925 | 8 | 7 | 18 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 61.1354 | 51.8519 | 74.4681 | 94.2402 | 14 | 13 | 35 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | het | 60.0000 | 56.2500 | 64.2857 | 95.4173 | 9 | 7 | 18 | 10 | 2 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | segdup | het | 91.8575 | 96.3855 | 87.7358 | 93.5009 | 80 | 3 | 93 | 13 | 2 | 15.3846 | |
| qzeng-custom | INDEL | I6_15 | segdup | homalt | 91.5760 | 95.7447 | 87.7551 | 90.9926 | 45 | 2 | 43 | 6 | 2 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | * | 85.6287 | 84.6154 | 86.6667 | 46.4286 | 11 | 2 | 13 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8173 | 100.0000 | 99.6353 | 62.2834 | 1383 | 0 | 1366 | 5 | 2 | 40.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7252 | 97.2727 | 98.1818 | 92.1090 | 107 | 3 | 108 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2828 | 99.0685 | 99.4980 | 45.3418 | 4573 | 43 | 4559 | 23 | 2 | 8.6957 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0362 | 99.2900 | 96.8136 | 69.3472 | 1818 | 13 | 1823 | 60 | 2 | 3.3333 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5105 | 99.3794 | 99.6419 | 52.1832 | 1121 | 7 | 1113 | 4 | 2 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8699 | 99.5676 | 98.1818 | 59.8602 | 2533 | 11 | 2538 | 47 | 2 | 4.2553 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7078 | 100.0000 | 99.4172 | 52.2803 | 858 | 0 | 853 | 5 | 2 | 40.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6888 | 99.5692 | 99.8086 | 46.3323 | 6241 | 27 | 6258 | 12 | 2 | 16.6667 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 88.5324 | 96.0396 | 82.1138 | 95.4326 | 97 | 4 | 101 | 22 | 2 | 9.0909 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.6341 | 95.4545 | 74.4186 | 96.0148 | 63 | 3 | 64 | 22 | 2 | 9.0909 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5072 | 99.1591 | 99.8579 | 31.1980 | 1415 | 12 | 1405 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5765 | 99.1813 | 96.0227 | 68.9046 | 848 | 7 | 845 | 35 | 2 | 5.7143 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.3260 | 97.5610 | 95.1220 | 92.6391 | 40 | 1 | 39 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7709 | 99.7712 | 99.7706 | 38.2436 | 1308 | 3 | 1305 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | * | HG002compoundhet | hetalt | 95.3715 | 91.1597 | 99.9913 | 50.4712 | 22954 | 2226 | 23068 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.5440 | 84.4657 | 99.9171 | 36.7662 | 2300 | 423 | 2411 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.6217 | 88.0000 | 91.3043 | 82.5095 | 44 | 6 | 42 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | * | 96.6054 | 96.6926 | 96.5184 | 90.3545 | 497 | 17 | 499 | 18 | 2 | 11.1111 | |
| raldana-dualsentieon | INDEL | * | map_l150_m0_e0 | homalt | 97.8462 | 96.9512 | 98.7578 | 89.5182 | 159 | 5 | 159 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | het | 96.8336 | 96.3743 | 97.2973 | 87.9068 | 824 | 31 | 828 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.1461 | 97.4026 | 98.9011 | 86.8269 | 450 | 12 | 450 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | het | 96.9552 | 96.4680 | 97.4473 | 88.6581 | 874 | 32 | 878 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e0 | homalt | 98.2199 | 97.5052 | 98.9451 | 88.0424 | 469 | 12 | 469 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | het | 96.9025 | 96.3203 | 97.4918 | 88.7346 | 890 | 34 | 894 | 23 | 2 | 8.6957 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | * | 94.5813 | 94.4262 | 94.7368 | 94.7396 | 288 | 17 | 288 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | * | 95.0076 | 94.8640 | 95.1515 | 95.0798 | 314 | 17 | 314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | * | 95.0376 | 94.8949 | 95.1807 | 95.1912 | 316 | 17 | 316 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | segdup | het | 99.0763 | 98.7722 | 99.3823 | 94.1484 | 1448 | 18 | 1448 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 91.4286 | 100.0000 | 84.2105 | 82.0755 | 15 | 0 | 16 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8737 | 70.8571 | 96.9466 | 64.3052 | 124 | 51 | 127 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 80.0000 | 76.9231 | 83.3333 | 88.5714 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 83.3333 | 83.3333 | 83.3333 | 86.8613 | 15 | 3 | 15 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 80.0000 | 76.9231 | 83.3333 | 90.6977 | 20 | 6 | 20 | 4 | 2 | 50.0000 | |