PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55651-55700 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5711 | 99.3100 | 99.8335 | 74.5893 | 3598 | 25 | 3598 | 6 | 2 | 33.3333 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9303 | 99.9535 | 99.9071 | 44.5246 | 2151 | 1 | 2151 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.3181 | 84.0000 | 90.9091 | 83.8235 | 42 | 8 | 40 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | map_l125_m0_e0 | het | 96.7218 | 97.7853 | 95.6811 | 90.4293 | 574 | 13 | 576 | 26 | 2 | 7.6923 | |
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | * | 90.9091 | 96.1538 | 86.2069 | 97.6404 | 75 | 3 | 75 | 12 | 2 | 16.6667 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | het | 94.3590 | 96.8421 | 92.0000 | 96.2714 | 184 | 6 | 184 | 16 | 2 | 12.5000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 94.2144 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | het | 94.6636 | 97.1429 | 92.3077 | 96.3848 | 204 | 6 | 204 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 94.7513 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | het | 94.6882 | 97.1564 | 92.3423 | 96.4734 | 205 | 6 | 205 | 17 | 2 | 11.7647 | |
| hfeng-pmm2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2759 | 98.2759 | 98.2759 | 94.8444 | 114 | 2 | 114 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | * | 89.2857 | 100.0000 | 80.6452 | 90.2054 | 1 | 0 | 50 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | hetalt | 77.7778 | 100.0000 | 63.6364 | 86.7470 | 1 | 0 | 7 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 75.6798 | 94.7674 | 62.9921 | 72.8632 | 163 | 9 | 160 | 94 | 2 | 2.1277 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 38.1346 | 97.7011 | 23.6908 | 69.1538 | 85 | 2 | 95 | 306 | 2 | 0.6536 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 37.1972 | 98.0769 | 22.9508 | 63.1197 | 51 | 1 | 70 | 235 | 2 | 0.8511 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 48.9083 | 72.7273 | 36.8421 | 93.3913 | 32 | 12 | 42 | 72 | 2 | 2.7778 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 51.4512 | 86.6667 | 36.5854 | 95.2982 | 13 | 2 | 15 | 26 | 2 | 7.6923 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 69.0137 | 96.7213 | 53.6458 | 60.5749 | 59 | 2 | 103 | 89 | 2 | 2.2472 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.5217 | 100.0000 | 61.9718 | 67.8733 | 45 | 0 | 44 | 27 | 2 | 7.4074 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 83.4242 | 73.9130 | 95.7447 | 98.9135 | 34 | 12 | 45 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 85.7732 | 78.7879 | 94.1176 | 99.0950 | 26 | 7 | 32 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | segdup | homalt | 99.3034 | 99.4429 | 99.1643 | 93.1723 | 357 | 2 | 356 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 81.2587 | 87.3786 | 75.9398 | 90.8842 | 90 | 13 | 101 | 32 | 2 | 6.2500 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 80.0602 | 87.5000 | 73.7864 | 75.5344 | 56 | 8 | 76 | 27 | 2 | 7.4074 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 80.3712 | 78.7234 | 82.0896 | 94.0603 | 37 | 10 | 55 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 83.2909 | 81.2500 | 85.4369 | 92.7821 | 52 | 12 | 88 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | homalt | 85.3553 | 85.2941 | 85.4167 | 83.5616 | 29 | 5 | 41 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m0_e0 | * | 80.7692 | 75.0000 | 87.5000 | 96.5517 | 24 | 8 | 28 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 84.5815 | 82.0513 | 87.2727 | 95.2668 | 32 | 7 | 48 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 66.2037 | 61.1111 | 72.2222 | 98.0456 | 11 | 7 | 13 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | het | 67.3077 | 63.6364 | 71.4286 | 98.2673 | 7 | 4 | 10 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 66.1017 | 59.0909 | 75.0000 | 98.0276 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 64.2336 | 57.1429 | 73.3333 | 98.2935 | 8 | 6 | 11 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 66.1017 | 59.0909 | 75.0000 | 98.0658 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 64.2336 | 57.1429 | 73.3333 | 98.3221 | 8 | 6 | 11 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 65.6250 | 58.3333 | 75.0000 | 80.1418 | 14 | 10 | 21 | 7 | 2 | 28.5714 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.9750 | 94.3820 | 93.5714 | 66.5072 | 84 | 5 | 131 | 9 | 2 | 22.2222 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 84.9421 | 93.7500 | 77.6471 | 53.8043 | 15 | 1 | 66 | 19 | 2 | 10.5263 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 75.6710 | 62.0959 | 96.8421 | 54.7619 | 557 | 340 | 92 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.7740 | 98.0000 | 97.5490 | 59.2814 | 196 | 4 | 199 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4037 | 99.7908 | 99.0196 | 71.3644 | 477 | 1 | 505 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8890 | 98.8482 | 98.9300 | 77.8496 | 944 | 11 | 1017 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 74.9914 | 61.2342 | 96.7213 | 48.3051 | 387 | 245 | 59 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 88.0893 | 78.8037 | 99.8556 | 25.8168 | 3175 | 854 | 1383 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 89.3374 | 80.8410 | 99.8295 | 33.0289 | 3076 | 729 | 1757 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 92.3995 | 86.2069 | 99.5506 | 43.8131 | 975 | 156 | 443 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 80.6497 | 68.7500 | 97.5309 | 82.4295 | 143 | 65 | 237 | 6 | 2 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 78.6104 | 65.7895 | 97.6378 | 87.2873 | 75 | 39 | 124 | 3 | 2 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 80.9911 | 68.5015 | 99.0506 | 83.1197 | 224 | 103 | 313 | 3 | 2 | 66.6667 | |