PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55351-55400 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | het | 98.6982 | 99.0358 | 98.3629 | 83.8617 | 719 | 7 | 721 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | het | 98.7626 | 99.0838 | 98.4436 | 84.5181 | 757 | 7 | 759 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | het | 98.7722 | 99.0909 | 98.4556 | 84.6291 | 763 | 7 | 765 | 12 | 2 | 16.6667 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | het | 98.4563 | 98.9627 | 97.9550 | 86.5733 | 477 | 5 | 479 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.5517 | 99.0272 | 98.0806 | 87.1263 | 509 | 5 | 511 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | het | 98.4769 | 98.8506 | 98.1061 | 87.1814 | 516 | 6 | 518 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | het | 99.3647 | 99.4730 | 99.2567 | 77.5211 | 2265 | 12 | 2270 | 17 | 2 | 11.7647 | |
| hfeng-pmm3 | INDEL | D6_15 | * | hetalt | 96.8203 | 93.8708 | 99.9612 | 33.0763 | 7673 | 501 | 7722 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8514 | 86.7287 | 99.9044 | 30.7514 | 2052 | 314 | 2090 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.7735 | 93.7833 | 99.9606 | 29.6505 | 7558 | 501 | 7606 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3153 | 96.9789 | 99.6891 | 57.4040 | 1605 | 50 | 1603 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3028 | 98.7861 | 99.8249 | 33.3463 | 1709 | 21 | 1710 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7814 | 98.0085 | 99.5665 | 42.6678 | 689 | 14 | 689 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2356 | 91.2621 | 97.4093 | 87.4594 | 188 | 18 | 188 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 91.8605 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0122 | 94.5111 | 99.6491 | 66.8219 | 551 | 32 | 568 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0452 | 94.5372 | 99.6899 | 70.9197 | 623 | 36 | 643 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.5706 | 83.9080 | 96.0526 | 84.2975 | 73 | 14 | 73 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.7273 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9161 | 92.6686 | 99.3994 | 59.6852 | 316 | 25 | 331 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.6037 | 94.0559 | 99.2933 | 56.1920 | 269 | 17 | 281 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.6522 | 100.0000 | 91.6667 | 87.0968 | 22 | 0 | 22 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.0664 | 92.8947 | 99.4624 | 64.1618 | 353 | 27 | 370 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0452 | 94.5372 | 99.6899 | 70.9197 | 623 | 36 | 643 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.1365 | 93.1900 | 99.2754 | 67.6056 | 260 | 19 | 274 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 79.5833 | 45 | 2 | 47 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 80.0000 | 100.0000 | 66.6667 | 88.8889 | 4 | 0 | 4 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | * | hetalt | 97.1290 | 94.4350 | 99.9812 | 61.2138 | 10572 | 623 | 10632 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0250 | 96.2341 | 99.8839 | 70.2777 | 1661 | 65 | 1721 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8615 | 98.0480 | 99.6885 | 70.4692 | 1306 | 26 | 1280 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6041 | 99.3604 | 99.8489 | 69.0699 | 2641 | 17 | 2643 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8968 | 100.0000 | 99.7938 | 63.5064 | 968 | 0 | 968 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4393 | 99.6255 | 99.2537 | 63.5870 | 266 | 1 | 266 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5533 | 98.7097 | 98.3974 | 87.4598 | 306 | 4 | 307 | 5 | 2 | 40.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.1412 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.9155 | 98.7952 | 99.0361 | 84.0996 | 820 | 10 | 822 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.2073 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8315 | 98.5998 | 99.0643 | 85.4245 | 845 | 12 | 847 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 82.7569 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8490 | 98.6207 | 99.0783 | 85.5790 | 858 | 12 | 860 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.0475 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | * | 98.0105 | 97.7273 | 98.2955 | 90.9558 | 172 | 4 | 173 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 86.8821 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.4221 | 98.4190 | 98.4252 | 87.6729 | 498 | 8 | 500 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 84.9099 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.3636 | 98.2659 | 98.4615 | 88.9078 | 510 | 9 | 512 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 86.7961 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4006 | 98.3051 | 98.4962 | 88.9741 | 522 | 9 | 524 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 86.9318 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |