PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54701-54750 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | het | 94.6524 | 93.1579 | 96.1957 | 95.0297 | 177 | 13 | 177 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | het | 95.1691 | 93.8095 | 96.5686 | 95.2536 | 197 | 13 | 197 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | het | 95.1923 | 93.8389 | 96.5854 | 95.3641 | 198 | 13 | 198 | 7 | 1 | 14.2857 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | homalt | 99.1334 | 98.9619 | 99.3056 | 74.5133 | 286 | 3 | 286 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6156 | 99.4518 | 99.7800 | 65.1991 | 907 | 5 | 907 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7604 | 97.5124 | 96.0199 | 87.0988 | 196 | 5 | 193 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6608 | 97.0930 | 98.2353 | 79.4686 | 167 | 5 | 167 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1495 | 99.0291 | 99.2701 | 69.1789 | 816 | 8 | 816 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.3065 | 99.1690 | 99.4444 | 61.2487 | 358 | 3 | 358 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3464 | 99.1304 | 99.5633 | 66.6181 | 228 | 2 | 228 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7815 | 94.0000 | 99.7326 | 35.9589 | 329 | 21 | 373 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5124 | 96.0784 | 98.9899 | 59.9190 | 98 | 4 | 98 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.4127 | 98.7261 | 98.1013 | 62.9977 | 155 | 2 | 155 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.5207 | 100.0000 | 95.1613 | 75.2000 | 61 | 0 | 59 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1818 | 89.1304 | 97.6190 | 65.2893 | 41 | 5 | 41 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.8889 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | * | 92.3827 | 93.7063 | 91.0959 | 92.6633 | 134 | 9 | 133 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | het | 92.3788 | 96.1538 | 88.8889 | 94.1727 | 75 | 3 | 72 | 9 | 1 | 11.1111 | |
| hfeng-pmm1 | INDEL | D1_5 | * | hetalt | 97.2784 | 94.7194 | 99.9795 | 63.7385 | 9704 | 541 | 9748 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002complexvar | hetalt | 97.9678 | 96.1538 | 99.8514 | 73.2565 | 1300 | 52 | 1344 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | HG002compoundhet | hetalt | 97.2704 | 94.7044 | 99.9793 | 59.1395 | 9675 | 541 | 9675 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2781 | 97.3753 | 99.1979 | 63.8123 | 742 | 20 | 742 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3871 | 98.1609 | 98.6143 | 65.7437 | 427 | 8 | 427 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4468 | 99.0921 | 99.8040 | 75.9768 | 1528 | 14 | 1528 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2923 | 98.9154 | 99.6721 | 75.2903 | 912 | 10 | 912 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7251 | 99.4854 | 99.9660 | 53.9892 | 14694 | 76 | 14695 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.9502 | 96.8714 | 99.0533 | 81.2139 | 836 | 27 | 837 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.4175 | 99.2248 | 99.6109 | 81.1722 | 256 | 2 | 256 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.4990 | 97.6190 | 99.3949 | 80.5561 | 1804 | 44 | 1807 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5766 | 99.3243 | 99.8302 | 80.5031 | 588 | 4 | 588 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5254 | 97.6501 | 99.4164 | 81.4523 | 1870 | 45 | 1874 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 81.4067 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.5438 | 97.6792 | 99.4238 | 81.5751 | 1894 | 45 | 1898 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5958 | 99.3548 | 99.8379 | 81.4993 | 616 | 4 | 616 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | * | 97.8604 | 96.7742 | 98.9712 | 84.7887 | 480 | 16 | 481 | 5 | 1 | 20.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.9831 | 98.6486 | 99.3197 | 85.1215 | 146 | 2 | 146 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0946 | 96.9669 | 99.2488 | 83.4909 | 1055 | 33 | 1057 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.4253 | 99.1404 | 99.7118 | 83.2690 | 346 | 3 | 346 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.1873 | 97.1129 | 99.2857 | 84.4854 | 1110 | 33 | 1112 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.4490 | 99.1758 | 99.7238 | 84.2814 | 361 | 3 | 361 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.2094 | 97.1478 | 99.2945 | 84.5735 | 1124 | 33 | 1126 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4609 | 99.1935 | 99.7297 | 84.2620 | 369 | 3 | 369 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7337 | 96.8858 | 98.5965 | 88.2183 | 280 | 9 | 281 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 88.5445 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8825 | 96.6527 | 99.1441 | 85.9378 | 693 | 24 | 695 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.1189 | 98.6842 | 99.5575 | 85.6690 | 225 | 3 | 225 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0117 | 96.8545 | 99.1968 | 86.8347 | 739 | 24 | 741 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 86.5697 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.9841 | 96.7866 | 99.2116 | 86.8612 | 753 | 25 | 755 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 86.5058 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |