PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54551-54600 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 89.4737 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 89.2308 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | hetalt | 78.8060 | 68.7500 | 92.3077 | 82.6667 | 11 | 5 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | * | 95.7890 | 95.7447 | 95.8333 | 93.4426 | 45 | 2 | 46 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | het | 94.1851 | 95.8333 | 92.5926 | 93.6620 | 23 | 1 | 25 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2519 | 96.8208 | 95.6897 | 69.9482 | 335 | 11 | 333 | 15 | 1 | 6.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4400 | 98.0595 | 98.8235 | 76.0788 | 758 | 15 | 756 | 9 | 1 | 11.1111 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.9011 | 98.3607 | 99.4475 | 79.0104 | 540 | 9 | 540 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3333 | 98.3333 | 98.3333 | 77.7778 | 59 | 1 | 59 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.6549 | 94.0260 | 99.4350 | 76.0811 | 362 | 23 | 352 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | het | 98.7377 | 99.1540 | 98.3250 | 82.6403 | 586 | 5 | 587 | 10 | 1 | 10.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | homalt | 99.6124 | 99.6124 | 99.6124 | 80.3503 | 257 | 1 | 257 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.5766 | 99.3243 | 99.8302 | 79.6546 | 588 | 4 | 588 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.5898 | 99.3453 | 99.8355 | 80.5937 | 607 | 4 | 607 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.5958 | 99.3548 | 99.8379 | 80.6765 | 616 | 4 | 616 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | het | 98.2742 | 98.8406 | 97.7143 | 86.4341 | 341 | 4 | 342 | 8 | 1 | 12.5000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 99.3243 | 99.3243 | 99.3243 | 84.1880 | 147 | 1 | 147 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m1_e0 | homalt | 99.5696 | 99.4269 | 99.7126 | 82.3350 | 347 | 2 | 347 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e0 | homalt | 99.5873 | 99.4505 | 99.7245 | 83.3867 | 362 | 2 | 362 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.5962 | 99.4624 | 99.7305 | 83.3707 | 370 | 2 | 370 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | * | 98.4604 | 99.3080 | 97.6271 | 89.5723 | 287 | 2 | 288 | 7 | 1 | 14.2857 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 99.4152 | 100.0000 | 98.8372 | 87.8187 | 85 | 0 | 85 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | homalt | 99.3407 | 99.1228 | 99.5595 | 84.8667 | 226 | 2 | 226 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | homalt | 99.1701 | 98.7603 | 99.5833 | 85.9155 | 239 | 3 | 239 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | homalt | 99.1903 | 98.7903 | 99.5935 | 85.8702 | 245 | 3 | 245 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9710 | 98.8304 | 97.1264 | 94.1037 | 169 | 2 | 169 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | het | 97.3451 | 99.0991 | 95.6522 | 94.4923 | 110 | 1 | 110 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.1132 | 98.9130 | 97.3262 | 94.4329 | 182 | 2 | 182 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e0 | het | 97.5610 | 99.1736 | 96.0000 | 94.6831 | 120 | 1 | 120 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.1233 | 98.9189 | 97.3404 | 94.5285 | 183 | 2 | 183 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m2_e1 | het | 97.5806 | 99.1803 | 96.0317 | 94.7522 | 121 | 1 | 121 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | HG002complexvar | hetalt | 97.4277 | 95.1629 | 99.8030 | 47.8149 | 964 | 49 | 1013 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0477 | 98.3085 | 99.7982 | 63.4722 | 988 | 17 | 989 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7719 | 97.7431 | 99.8227 | 66.2275 | 563 | 13 | 563 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5356 | 99.3048 | 99.7674 | 61.5385 | 857 | 6 | 858 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.5161 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.4148 | 85.9485 | 99.9334 | 29.8926 | 1468 | 240 | 1500 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.6815 | 93.6024 | 99.9702 | 26.8790 | 6657 | 455 | 6701 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.6740 | 93.5880 | 99.9704 | 27.5688 | 6714 | 460 | 6758 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.7544 | 73.6239 | 99.8498 | 26.3274 | 642 | 230 | 665 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7054 | 99.5294 | 99.8819 | 48.3851 | 846 | 4 | 846 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.0178 | 94.3253 | 99.8684 | 24.7525 | 748 | 45 | 759 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 99.4819 | 100.0000 | 98.9691 | 42.7729 | 192 | 0 | 192 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8546 | 96.4789 | 99.2701 | 42.6778 | 137 | 5 | 136 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.7427 | 95.8333 | 95.6522 | 73.8636 | 23 | 1 | 22 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | * | 97.0509 | 94.7644 | 99.4505 | 92.8823 | 181 | 10 | 181 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | segdup | homalt | 99.0099 | 100.0000 | 98.0392 | 91.6938 | 50 | 0 | 50 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | HG002compoundhet | het | 91.1593 | 87.2340 | 95.4545 | 94.5679 | 41 | 6 | 21 | 1 | 1 | 100.0000 | |