PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54501-54550 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 90.9091 | 100.0000 | 83.3333 | 96.5517 | 3 | 0 | 5 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.2934 | 95.3488 | 95.2381 | 76.6667 | 41 | 2 | 40 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 92.3077 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 90.4762 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 96.8085 | 94.7917 | 98.9130 | 40.4531 | 182 | 10 | 182 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 96.2238 | 98.3333 | 94.2029 | 88.3051 | 59 | 1 | 65 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | homalt | 97.9592 | 100.0000 | 96.0000 | 87.9808 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 76.2195 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.1240 | 96.8750 | 95.3846 | 83.7093 | 62 | 2 | 62 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 73.7303 | 60.2941 | 94.8718 | 77.3256 | 41 | 27 | 37 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.1832 | 96.9231 | 95.4545 | 84.6512 | 63 | 2 | 63 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 95.5224 | 95.5224 | 95.5224 | 84.7727 | 64 | 3 | 64 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | het | 96.6628 | 96.5517 | 96.7742 | 92.3077 | 28 | 1 | 30 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m0_e0 | homalt | 96.0000 | 100.0000 | 92.3077 | 91.4474 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | homalt | 97.0588 | 97.0588 | 97.0588 | 87.4539 | 33 | 1 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | homalt | 97.2222 | 97.2222 | 97.2222 | 87.8378 | 35 | 1 | 35 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | homalt | 97.2973 | 97.2973 | 97.2973 | 87.7483 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2267 | 95.0000 | 95.4545 | 93.3333 | 19 | 1 | 21 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.7500 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m1_e0 | homalt | 96.1538 | 96.1538 | 96.1538 | 88.2883 | 25 | 1 | 25 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e0 | homalt | 96.4286 | 96.4286 | 96.4286 | 88.9328 | 27 | 1 | 27 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 88.6719 | 28 | 1 | 28 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | hetalt | 72.8695 | 58.5859 | 96.3636 | 78.5992 | 58 | 41 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | homalt | 96.8992 | 96.1538 | 97.6562 | 81.7404 | 125 | 5 | 125 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.9362 | 86.3636 | 91.6667 | 83.5616 | 57 | 9 | 55 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.7037 | 91.6667 | 95.8333 | 85.4545 | 22 | 2 | 23 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.7007 | 89.8148 | 97.9381 | 75.3181 | 97 | 11 | 95 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.9953 | 85.7143 | 96.9697 | 69.4444 | 30 | 5 | 32 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.2857 | 94.2857 | 94.2857 | 79.7688 | 33 | 2 | 33 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 95.4023 | 93.2584 | 97.6471 | 70.5882 | 83 | 6 | 83 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.0000 | 95.0000 | 95.0000 | 62.2642 | 19 | 1 | 19 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 66.4234 | 53.8462 | 86.6667 | 90.1316 | 14 | 12 | 13 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 97.8261 | 1 | 2 | 0 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 75.8865 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 75.0000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | * | 81.6327 | 76.9231 | 86.9565 | 87.7660 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m1_e0 | het | 85.7143 | 83.3333 | 88.2353 | 86.6142 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | * | 81.6327 | 76.9231 | 86.9565 | 89.9123 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e0 | het | 85.7143 | 83.3333 | 88.2353 | 88.3562 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | * | 81.6327 | 76.9231 | 86.9565 | 90.0433 | 20 | 6 | 20 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l100_m2_e1 | het | 85.7143 | 83.3333 | 88.2353 | 88.5906 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | * | 78.5714 | 73.3333 | 84.6154 | 88.7931 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 89.2857 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 90.1515 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.1099 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | * | 78.5714 | 73.3333 | 84.6154 | 90.2985 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 90.3226 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | * | 76.1905 | 72.7273 | 80.0000 | 87.9518 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.3333 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |