PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54151-54200 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | * | func_cds | homalt | 97.5248 | 95.5752 | 99.5556 | 29.9065 | 216 | 10 | 224 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 94.3627 | 91.6667 | 97.2222 | 98.4307 | 11 | 1 | 35 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 98.5507 | 100.0000 | 97.1429 | 98.4047 | 10 | 0 | 34 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 7.6596 | 4.0000 | 90.0000 | 81.1321 | 5 | 120 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m1_e0 | hetalt | 73.9130 | 60.0000 | 96.2264 | 93.4243 | 24 | 16 | 51 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | hetalt | 73.6278 | 59.5238 | 96.4912 | 93.6947 | 25 | 17 | 55 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | hetalt | 72.5594 | 58.1395 | 96.4912 | 93.8245 | 25 | 18 | 55 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | tech_badpromoters | het | 91.9609 | 87.1795 | 97.2973 | 46.3768 | 34 | 5 | 36 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 95.2381 | 94.7368 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 95.2381 | 85.1064 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 95.6522 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 75.0000 | 90.5882 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.5915 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 94.1748 | 0 | 0 | 3 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 97.6744 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 88.8889 | 95.9276 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 94.8718 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 92.9577 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.2222 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.0000 | 96.8254 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 83.3333 | 96.1290 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 95.8333 | 0 | 0 | 5 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 88.8889 | 95.9276 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 96.9697 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 50.0000 | 95.3488 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 90.1639 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 53.8462 | 93.6585 | 0 | 0 | 7 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.2222 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.0769 | 94.5493 | 0 | 0 | 19 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 83.3333 | 98.0583 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 87.5000 | 96.2175 | 0 | 0 | 28 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 97.9339 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 75.0000 | 99.7623 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | het | 77.8168 | 64.2603 | 98.6225 | 90.8714 | 7949 | 4421 | 7947 | 111 | 1 | 0.9009 | |
| ckim-vqsr | SNP | ti | map_l150_m1_e0 | homalt | 39.6323 | 24.7168 | 99.9448 | 90.0193 | 1811 | 5516 | 1811 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e0 | homalt | 41.2133 | 25.9585 | 99.9494 | 90.5585 | 1977 | 5639 | 1977 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l150_m2_e1 | homalt | 41.3935 | 26.1017 | 99.9502 | 90.5160 | 2008 | 5685 | 2008 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_siren | hetalt | 69.6629 | 54.3860 | 96.8750 | 86.4407 | 31 | 26 | 31 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.8052 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.2267 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4652 | 99.1471 | 99.7854 | 85.4602 | 465 | 4 | 465 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6989 | 99.4660 | 99.9329 | 79.6894 | 1490 | 8 | 1490 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7164 | 99.4907 | 99.9431 | 60.9458 | 1758 | 9 | 1758 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6992 | 99.3022 | 98.1034 | 41.3093 | 7400 | 52 | 7397 | 143 | 1 | 0.6993 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2513 | 99.5095 | 97.0246 | 43.7566 | 4666 | 23 | 4663 | 143 | 1 | 0.6993 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | * | 69.0592 | 53.2118 | 98.3492 | 88.9281 | 5898 | 5186 | 5898 | 99 | 1 | 1.0101 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | het | 79.8556 | 67.3775 | 98.0060 | 89.3473 | 4866 | 2356 | 4866 | 99 | 1 | 1.0101 | |