PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53751-53800 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 0.0000 | 0.0000 | 96.1538 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 98.7179 | 0 | 15 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 0.0000 | 0.0000 | 96.4286 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 98.0769 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 98.2456 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 94.4444 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 98.3607 | 0 | 11 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 3.3784 | 2.4272 | 5.5556 | 80.2198 | 5 | 201 | 1 | 17 | 1 | 5.8824 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 8.0000 | 0.0000 | 94.3396 | 2 | 23 | 0 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 34.6359 | 22.3881 | 76.4706 | 94.6875 | 15 | 52 | 13 | 4 | 1 | 25.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 28.5714 | 22.2222 | 40.0000 | 97.6526 | 2 | 7 | 2 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 22.6415 | 13.6364 | 66.6667 | 97.8774 | 6 | 38 | 6 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 25.4545 | 15.5556 | 70.0000 | 98.0198 | 7 | 38 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 28.0702 | 17.3913 | 72.7273 | 97.8887 | 8 | 38 | 8 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I6_15 | func_cds | het | 52.9412 | 37.5000 | 90.0000 | 41.1765 | 9 | 15 | 9 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 48.9796 | 34.2857 | 85.7143 | 88.7097 | 12 | 23 | 12 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 27.7778 | 16.6667 | 83.3333 | 95.4545 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 91.3793 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 27.7778 | 16.6667 | 83.3333 | 96.3190 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.7536 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 27.7778 | 16.6667 | 83.3333 | 96.3415 | 5 | 25 | 5 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | homalt | 30.0000 | 20.0000 | 60.0000 | 92.8571 | 3 | 12 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.3856 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 97.9167 | 0 | 7 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 20.6897 | 12.0000 | 75.0000 | 97.8022 | 3 | 22 | 3 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.2759 | 0 | 7 | 0 | 1 | 1 | 100.0000 | ||
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 18.7500 | 11.1111 | 60.0000 | 97.2973 | 3 | 24 | 3 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 96.6667 | 0 | 8 | 0 | 2 | 1 | 50.0000 | ||
| ckim-dragen | SNP | ti | segdup | hetalt | 80.0000 | 100.0000 | 66.6667 | 98.6607 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 42.5676 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.1734 | 98.5778 | 99.7763 | 50.5713 | 1317 | 19 | 1338 | 3 | 1 | 33.3333 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.0631 | 98.4795 | 99.6536 | 52.7550 | 842 | 13 | 863 | 3 | 1 | 33.3333 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 95.8714 | 96.9697 | 94.7977 | 90.1143 | 160 | 5 | 164 | 9 | 1 | 11.1111 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5866 | 96.7742 | 98.4127 | 90.1946 | 120 | 4 | 124 | 2 | 1 | 50.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8860 | 99.9003 | 99.8718 | 61.7413 | 7012 | 7 | 7013 | 9 | 1 | 11.1111 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9743 | 99.9743 | 99.9743 | 59.5233 | 3886 | 1 | 3888 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | * | 97.1831 | 95.8333 | 98.5714 | 45.3125 | 69 | 3 | 69 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.2500 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | func_cds | * | 99.3314 | 99.7753 | 98.8914 | 54.2132 | 444 | 1 | 446 | 5 | 1 | 20.0000 | |
| ckim-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 39.4667 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.8354 | 90.5579 | 99.5370 | 73.1009 | 211 | 22 | 215 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8597 | 99.9065 | 99.8129 | 76.8740 | 2136 | 2 | 2134 | 4 | 1 | 25.0000 | |