PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53601-53650 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.8722 | 97.8873 | 99.8771 | 70.5393 | 834 | 18 | 813 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6282 | 99.2848 | 99.9740 | 70.9201 | 3887 | 28 | 3839 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9481 | 99.9110 | 99.9851 | 30.4766 | 6739 | 6 | 6724 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.5954 | 83.3333 | 96.8750 | 92.7928 | 85 | 17 | 93 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 93.6380 | 90.2439 | 97.2973 | 85.9316 | 37 | 4 | 36 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l100_m0_e0 | homalt | 98.1150 | 96.3081 | 99.9911 | 57.3704 | 11191 | 429 | 11188 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m0_e0 | homalt | 97.7145 | 95.5453 | 99.9844 | 64.7518 | 6413 | 299 | 6411 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | homalt | 98.3281 | 96.7169 | 99.9939 | 61.4654 | 16350 | 555 | 16345 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m2_e0 | homalt | 98.3473 | 96.7540 | 99.9941 | 64.3980 | 16811 | 564 | 16806 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l125_m2_e1 | homalt | 98.3624 | 96.7830 | 99.9941 | 64.4456 | 16968 | 564 | 16962 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m0_e0 | homalt | 97.4937 | 95.1333 | 99.9743 | 71.2925 | 3890 | 199 | 3888 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m1_e0 | homalt | 98.2123 | 96.4961 | 99.9908 | 66.3750 | 10878 | 395 | 10874 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m2_e0 | homalt | 98.2343 | 96.5382 | 99.9911 | 69.1013 | 11294 | 405 | 11290 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l150_m2_e1 | homalt | 98.2494 | 96.5672 | 99.9912 | 69.1407 | 11421 | 406 | 11416 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | homalt | 97.6442 | 95.5485 | 99.8339 | 90.2320 | 601 | 28 | 601 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m1_e0 | homalt | 98.0976 | 96.3053 | 99.9578 | 83.7177 | 2372 | 91 | 2371 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e0 | homalt | 98.1039 | 96.3142 | 99.9613 | 85.0046 | 2587 | 99 | 2586 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m2_e1 | homalt | 98.1075 | 96.3208 | 99.9618 | 85.0801 | 2618 | 100 | 2617 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | * | 98.0932 | 98.7261 | 97.4684 | 50.9317 | 155 | 2 | 154 | 4 | 1 | 25.0000 | |
| cchapple-custom | SNP | * | tech_badpromoters | homalt | 98.7421 | 98.7500 | 98.7342 | 44.3662 | 79 | 1 | 78 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | func_cds | * | 99.8586 | 99.9202 | 99.7971 | 24.6780 | 13776 | 11 | 13774 | 28 | 1 | 3.5714 | |
| cchapple-custom | SNP | ti | func_cds | het | 99.7946 | 99.9177 | 99.6718 | 27.6397 | 8497 | 7 | 8504 | 28 | 1 | 3.5714 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7222 | 99.4720 | 99.9738 | 61.6817 | 11491 | 61 | 11440 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.6621 | 99.8310 | 99.4938 | 54.7565 | 2954 | 5 | 2948 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.5376 | 99.8908 | 99.1870 | 59.6192 | 1829 | 2 | 1830 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7501 | 99.8753 | 99.6251 | 50.1743 | 4006 | 5 | 3986 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6468 | 99.8821 | 99.4127 | 54.4823 | 2541 | 3 | 2539 | 15 | 1 | 6.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8352 | 99.9180 | 99.7526 | 51.8658 | 2437 | 2 | 2419 | 6 | 1 | 16.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7466 | 99.8734 | 99.6200 | 55.6834 | 1578 | 2 | 1573 | 6 | 1 | 16.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9979 | 94.5701 | 99.5536 | 89.9281 | 209 | 12 | 223 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.0005 | 94.7368 | 99.3750 | 91.2807 | 144 | 8 | 159 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7222 | 99.4720 | 99.9738 | 61.6817 | 11491 | 61 | 11440 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8769 | 99.9262 | 99.8277 | 45.6225 | 4062 | 3 | 4055 | 7 | 1 | 14.2857 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9498 | 99.9248 | 99.9749 | 29.7121 | 3984 | 3 | 3978 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.7853 | 89.1089 | 98.9796 | 92.5362 | 90 | 11 | 97 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.8800 | 87.8788 | 98.4848 | 94.0000 | 58 | 8 | 65 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | homalt | 98.0662 | 96.2182 | 99.9866 | 56.4787 | 7480 | 294 | 7479 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m0_e0 | homalt | 97.6182 | 95.3685 | 99.9767 | 63.8992 | 4283 | 208 | 4282 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | homalt | 98.2873 | 96.6410 | 99.9906 | 60.9405 | 10674 | 371 | 10672 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | homalt | 98.3080 | 96.6808 | 99.9909 | 63.9160 | 10981 | 377 | 10979 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | homalt | 98.3230 | 96.7097 | 99.9910 | 63.9684 | 11081 | 377 | 11078 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | homalt | 97.5139 | 95.1829 | 99.9619 | 70.3118 | 2628 | 133 | 2627 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | homalt | 98.1515 | 96.3832 | 99.9858 | 66.0349 | 7062 | 265 | 7060 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | homalt | 98.1821 | 96.4417 | 99.9864 | 68.7543 | 7345 | 271 | 7343 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m2_e1 | homalt | 98.1938 | 96.4643 | 99.9865 | 68.8251 | 7421 | 272 | 7418 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m0_e0 | homalt | 97.8972 | 96.1009 | 99.7619 | 89.4393 | 419 | 17 | 419 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m1_e0 | homalt | 98.2278 | 96.5775 | 99.9356 | 83.5174 | 1552 | 55 | 1551 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m2_e0 | homalt | 98.1670 | 96.4551 | 99.9407 | 84.8332 | 1687 | 62 | 1686 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l250_m2_e1 | homalt | 98.1620 | 96.4447 | 99.9415 | 84.8962 | 1709 | 63 | 1708 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | HG002compoundhet | homalt | 99.4506 | 98.9374 | 99.9692 | 37.6656 | 3352 | 36 | 3246 | 1 | 1 | 100.0000 | |