PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53551-53600 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7899 | 99.7908 | 99.7890 | 71.4801 | 477 | 1 | 473 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 79.6460 | 66.5049 | 99.2593 | 44.6721 | 137 | 69 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 89.4961 | 81.4815 | 99.2593 | 43.5146 | 22 | 5 | 134 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0465 | 88.2353 | 98.4127 | 67.1447 | 45 | 6 | 248 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 91.6667 | 88.0000 | 95.6522 | 52.0833 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.6716 | 50.0000 | 95.6522 | 50.0000 | 1 | 1 | 22 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.7974 | 97.3684 | 98.2301 | 84.0395 | 111 | 3 | 111 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.6094 | 97.8593 | 99.3711 | 81.7451 | 320 | 7 | 316 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6662 | 97.9472 | 99.3958 | 83.2320 | 334 | 7 | 329 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6740 | 97.9592 | 99.3994 | 83.4739 | 336 | 7 | 331 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 93.4271 | 93.3962 | 93.4579 | 92.5952 | 99 | 7 | 100 | 7 | 1 | 14.2857 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 97.7444 | 97.0149 | 98.4848 | 88.2562 | 65 | 2 | 65 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4720 | 97.9798 | 98.9691 | 85.4899 | 194 | 4 | 192 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.4949 | 98.0100 | 98.9848 | 87.2244 | 197 | 4 | 195 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5173 | 98.0392 | 99.0000 | 87.3658 | 200 | 4 | 198 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 93.2492 | 92.4528 | 94.0594 | 95.6068 | 98 | 8 | 95 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5775 | 97.7273 | 95.4545 | 93.6232 | 43 | 1 | 42 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 93.6762 | 92.9204 | 94.4444 | 96.0497 | 105 | 8 | 102 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6539 | 97.7778 | 95.5556 | 94.5055 | 44 | 1 | 43 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 93.7328 | 92.9825 | 94.4954 | 96.1389 | 106 | 8 | 103 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7269 | 97.8261 | 95.6522 | 94.5691 | 45 | 1 | 44 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | func_cds | * | 97.7008 | 97.6744 | 97.7273 | 35.2941 | 42 | 1 | 43 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 33.3333 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.8075 | 92.5926 | 99.2537 | 72.1992 | 75 | 6 | 133 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 68.1034 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5758 | 97.4576 | 99.7199 | 68.4629 | 345 | 9 | 356 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4475 | 100.0000 | 98.9011 | 66.2963 | 92 | 0 | 90 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.5437 | 97.5207 | 99.5885 | 68.2768 | 236 | 6 | 242 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2481 | 100.0000 | 98.5075 | 67.1569 | 68 | 0 | 66 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.5778 | 77.1739 | 98.5915 | 60.3352 | 71 | 21 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 93.4891 | 88.8889 | 98.5915 | 57.4850 | 8 | 1 | 70 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4061 | 98.0645 | 98.7500 | 82.6464 | 152 | 3 | 158 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0099 | 100.0000 | 98.0392 | 80.3846 | 49 | 0 | 50 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 88.7845 | 84.8485 | 93.1034 | 92.0330 | 28 | 5 | 27 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 82.2134 | 76.4706 | 88.8889 | 93.3824 | 13 | 4 | 16 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 90.8495 | 89.8305 | 91.8919 | 87.8289 | 53 | 6 | 68 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 85.2018 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 91.1243 | 90.1639 | 92.1053 | 88.7073 | 55 | 6 | 70 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.8000 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 91.1744 | 90.1639 | 92.2078 | 88.8081 | 55 | 6 | 71 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 96.9697 | 96.9697 | 96.9697 | 86.9565 | 32 | 1 | 32 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | func_cds | * | 99.7855 | 99.9174 | 99.6539 | 26.7611 | 18135 | 15 | 18142 | 63 | 1 | 1.5873 | |
| cchapple-custom | SNP | * | func_cds | het | 99.6697 | 99.9014 | 99.4391 | 30.1424 | 11150 | 11 | 11168 | 63 | 1 | 1.5873 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6843 | 99.4279 | 99.9421 | 53.0723 | 1738 | 10 | 1725 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.6741 | 99.7905 | 99.5579 | 54.7054 | 4286 | 9 | 4279 | 19 | 1 | 5.2632 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.5359 | 99.7766 | 99.2963 | 59.3496 | 2680 | 6 | 2681 | 19 | 1 | 5.2632 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.7350 | 92.2280 | 97.3822 | 89.6054 | 356 | 30 | 372 | 10 | 1 | 10.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6110 | 90.9420 | 96.4413 | 90.6799 | 251 | 25 | 271 | 10 | 1 | 10.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7220 | 97.5815 | 99.8894 | 72.8284 | 928 | 23 | 903 | 1 | 1 | 100.0000 | |