PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53251-53300 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 92.8571 | 87.3874 | 0 | 0 | 13 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 83.3333 | 93.5484 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 60.0000 | 93.5345 | 0 | 0 | 9 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.2973 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.1959 | 96.1416 | 0 | 0 | 71 | 26 | 1 | 3.8462 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.0000 | 98.2487 | 0 | 0 | 9 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 77.8689 | 96.2531 | 0 | 0 | 95 | 27 | 1 | 3.7037 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.2381 | 97.4729 | 0 | 0 | 20 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 97.9592 | 96.7848 | 0 | 0 | 48 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 45.4545 | 90.4348 | 0 | 0 | 5 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 45.4545 | 89.5238 | 0 | 0 | 5 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.5455 | 100.0000 | 89.6552 | 92.7861 | 1 | 0 | 26 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.3077 | 100.0000 | 85.7143 | 93.1596 | 1 | 0 | 18 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 83.3333 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 81.8182 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.6744 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 66.6667 | 97.8723 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.9434 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 66.6667 | 98.1073 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 75.0000 | 98.0050 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 66.6667 | 98.1595 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 96.7742 | 93.6039 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.7742 | 83.0601 | 0 | 0 | 90 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 95.8904 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 95.1613 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 91.6667 | 94.1176 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 83.3333 | 95.9732 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 71.4286 | 95.7958 | 0 | 0 | 10 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 95.5056 | 0 | 0 | 8 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 94.7368 | 0 | 0 | 0 | 3 | 1 | 33.3333 | ||
| cchapple-custom | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 42.8571 | 95.1389 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 33.3333 | 94.4954 | 0 | 0 | 2 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 50.0000 | 95.2096 | 0 | 0 | 4 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 42.8571 | 94.4882 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 50.0000 | 95.2663 | 0 | 0 | 4 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 42.8571 | 94.5736 | 0 | 0 | 3 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 96.0784 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 94.8718 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 96.8000 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 95.7895 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 96.8504 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 95.8763 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 60.0000 | 96.0317 | 0 | 0 | 6 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 55.5556 | 95.4545 | 0 | 0 | 5 | 4 | 1 | 25.0000 | |
| cchapple-custom | INDEL | D16_PLUS | func_cds | * | 86.9565 | 83.3333 | 90.9091 | 75.5556 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | func_cds | het | 87.5000 | 87.5000 | 87.5000 | 77.7778 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.4444 | 94.7674 | 98.1818 | 75.3363 | 163 | 9 | 162 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0233 | 98.3380 | 99.7183 | 57.9882 | 355 | 6 | 354 | 1 | 1 | 100.0000 | |