PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53201-53250 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I6_15 | func_cds | * | 97.6744 | 97.6744 | 97.6744 | 43.4211 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2845 | 95.5466 | 99.0868 | 80.4290 | 236 | 11 | 217 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.6974 | 88.3019 | 99.7951 | 47.9744 | 468 | 62 | 487 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0437 | 91.5730 | 98.7879 | 71.6007 | 163 | 15 | 163 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.6301 | 100.0000 | 97.2973 | 70.8661 | 36 | 0 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0079 | 98.5876 | 99.4318 | 70.3953 | 349 | 5 | 350 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 70.5696 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3797 | 99.1736 | 99.5868 | 69.7500 | 240 | 2 | 241 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2701 | 100.0000 | 98.5507 | 70.7627 | 68 | 0 | 68 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.5748 | 95.9732 | 99.2308 | 77.4697 | 143 | 6 | 129 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.2785 | 70.6522 | 98.4848 | 62.0690 | 65 | 27 | 65 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.9217 | 68.6747 | 98.4848 | 30.5263 | 57 | 26 | 65 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9156 | 98.4914 | 99.3435 | 72.0489 | 457 | 7 | 454 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I6_15 | map_siren | het | 97.9021 | 97.9021 | 97.9021 | 87.2093 | 140 | 3 | 140 | 3 | 1 | 33.3333 | |
| ckim-dragen | SNP | * | func_cds | * | 99.5474 | 99.9669 | 99.1313 | 30.5099 | 18144 | 6 | 18144 | 159 | 1 | 0.6289 | |
| ckim-dragen | SNP | * | func_cds | het | 99.2748 | 99.9642 | 98.5949 | 34.9057 | 11157 | 4 | 11157 | 159 | 1 | 0.6289 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.9697 | 100.0000 | 94.1176 | 90.5556 | 15 | 0 | 16 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.0575 | 88.0952 | 82.2222 | 96.8750 | 37 | 5 | 37 | 8 | 1 | 12.5000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.1961 | 85.1852 | 95.8333 | 97.7941 | 23 | 4 | 23 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8538 | 99.7443 | 99.9634 | 29.9590 | 2731 | 7 | 2732 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | map_l250_m0_e0 | het | 95.1276 | 95.2855 | 94.9702 | 94.2264 | 1435 | 71 | 1435 | 76 | 1 | 1.3158 | |
| ckim-dragen | SNP | * | segdup | hetalt | 93.3333 | 100.0000 | 87.5000 | 97.7716 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | func_cds | * | 99.6097 | 99.9637 | 99.2582 | 28.1352 | 13782 | 5 | 13782 | 103 | 1 | 0.9709 | |
| ckim-dragen | SNP | ti | func_cds | het | 99.3804 | 99.9647 | 98.8029 | 32.2466 | 8501 | 3 | 8501 | 103 | 1 | 0.9709 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9362 | 96.3801 | 99.5434 | 90.9728 | 213 | 8 | 218 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.0107 | 96.7105 | 99.3464 | 91.3803 | 147 | 5 | 152 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 87.8261 | 12 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.7586 | 75.0000 | 92.3077 | 98.1690 | 12 | 4 | 12 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.7778 | 70.0000 | 87.5000 | 98.5102 | 7 | 3 | 7 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8598 | 99.7898 | 99.9299 | 26.0373 | 1424 | 3 | 1425 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | ti | map_l250_m0_e0 | het | 95.1974 | 95.5032 | 94.8936 | 94.2165 | 892 | 42 | 892 | 48 | 1 | 2.0833 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.1186 | 85.7143 | 95.0000 | 99.9602 | 18 | 3 | 19 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2523 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.7441 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.8546 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 94.1176 | 97.3228 | 0 | 0 | 16 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 97.4630 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 94.2857 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 80.0000 | 92.0635 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 92.8571 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.7143 | 98.0716 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.0000 | 98.5075 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 88.8889 | 97.4359 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 83.3333 | 97.9021 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 99.8741 | 90.5081 | 0 | 0 | 793 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.8741 | 75.9175 | 0 | 0 | 793 | 1 | 1 | 100.0000 | |