PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53151-53200 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.3451 | 96.4912 | 98.2143 | 94.0426 | 55 | 2 | 55 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | het | 94.7466 | 97.5207 | 92.1260 | 96.0730 | 118 | 3 | 117 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.5065 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | het | 94.7887 | 97.5410 | 92.1875 | 96.1481 | 119 | 3 | 118 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.6266 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | * | 97.5135 | 99.6374 | 95.4783 | 95.4077 | 1099 | 4 | 1098 | 52 | 1 | 1.9231 | |
| ckim-dragen | INDEL | D1_5 | segdup | homalt | 99.8609 | 100.0000 | 99.7222 | 94.4853 | 359 | 0 | 359 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2126 | 99.2126 | 99.2126 | 79.4830 | 126 | 1 | 126 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6744 | 97.6744 | 97.6744 | 79.9065 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 62.5000 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 63.2184 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.2090 | 74.3119 | 99.8512 | 25.9912 | 648 | 224 | 671 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4371 | 99.6241 | 99.2509 | 82.8296 | 265 | 1 | 265 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.2973 | 97.2973 | 97.2973 | 61.4583 | 36 | 1 | 36 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7151 | 99.5733 | 99.8573 | 46.9743 | 700 | 3 | 700 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5710 | 99.3151 | 99.8282 | 17.5637 | 580 | 4 | 581 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 43.2099 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.6170 | 91.6667 | 95.6522 | 75.0000 | 22 | 2 | 22 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | * | 96.6732 | 95.7364 | 97.6285 | 88.1886 | 247 | 11 | 247 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8254 | 95.3125 | 98.3871 | 89.1419 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | * | 96.5517 | 95.4545 | 97.6744 | 88.7582 | 252 | 12 | 252 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.4472 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | * | 96.5009 | 95.2727 | 97.7612 | 88.6200 | 262 | 13 | 262 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9697 | 95.5224 | 98.4615 | 89.3791 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 91.3883 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.0326 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0000 | 95.2381 | 96.7742 | 91.7278 | 120 | 6 | 120 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.1392 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6522 | 94.5312 | 96.8000 | 91.8936 | 121 | 7 | 121 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.1548 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | het | 99.0099 | 98.3459 | 99.6830 | 64.2493 | 654 | 11 | 629 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I16_PLUS | HG002compoundhet | het | 95.7890 | 95.7447 | 95.8333 | 94.6309 | 45 | 2 | 23 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | HG002compoundhet | hetalt | 95.4049 | 91.2566 | 99.9482 | 45.8824 | 1910 | 183 | 1931 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3668 | 97.7064 | 99.0361 | 85.6897 | 426 | 10 | 411 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7221 | 97.5000 | 97.9452 | 89.4888 | 156 | 4 | 143 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.3532 | 98.9691 | 99.7403 | 76.7652 | 384 | 4 | 384 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 84.1379 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | hetalt | 97.1421 | 94.4959 | 99.9407 | 69.6380 | 1631 | 95 | 1685 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.3380 | 94.8299 | 99.9823 | 61.6765 | 5631 | 307 | 5659 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6618 | 93.5550 | 99.9821 | 38.6326 | 5516 | 380 | 5573 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7904 | 99.7906 | 99.7901 | 80.0042 | 953 | 2 | 951 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8553 | 100.0000 | 99.7110 | 78.9538 | 346 | 0 | 345 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6618 | 93.5550 | 99.9821 | 38.6326 | 5516 | 380 | 5573 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0656 | 94.3233 | 99.9723 | 28.7295 | 3589 | 216 | 3606 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6989 | 95.7055 | 95.6923 | 87.6614 | 312 | 14 | 311 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | het | 94.5170 | 94.2708 | 94.7644 | 90.7191 | 181 | 11 | 181 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | * | 92.0000 | 95.8333 | 88.4615 | 97.8862 | 23 | 1 | 23 | 3 | 1 | 33.3333 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.7368 | 100.0000 | 90.0000 | 96.2547 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | segdup | het | 95.3418 | 99.2565 | 91.7241 | 96.0707 | 534 | 4 | 532 | 48 | 1 | 2.0833 | |
| ckim-dragen | INDEL | I6_15 | HG002compoundhet | hetalt | 95.5341 | 91.4607 | 99.9873 | 29.2729 | 7808 | 729 | 7849 | 1 | 1 | 100.0000 | |