PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52551-52600 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0337 | 84.5238 | 98.6301 | 61.1702 | 71 | 13 | 72 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3303 | 93.7500 | 99.0566 | 76.1261 | 105 | 7 | 105 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3694 | 98.9529 | 99.7895 | 80.5964 | 945 | 10 | 948 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7114 | 99.7110 | 99.7118 | 79.0838 | 345 | 1 | 346 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.3367 | 84.1772 | 99.8273 | 38.7302 | 532 | 100 | 578 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.0728 | 96.5190 | 99.6774 | 73.3677 | 305 | 11 | 309 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4622 | 99.2509 | 99.6743 | 63.1894 | 265 | 2 | 306 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 91.0720 | 85.4512 | 97.4843 | 89.1665 | 464 | 79 | 465 | 12 | 1 | 8.3333 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 96.0199 | 92.7885 | 99.4845 | 82.6009 | 193 | 15 | 193 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 90.3207 | 83.7349 | 98.0309 | 89.6582 | 695 | 135 | 697 | 14 | 1 | 7.1429 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 85.0612 | 76.1317 | 96.3636 | 91.7079 | 370 | 116 | 371 | 14 | 1 | 7.1429 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | * | 90.4534 | 84.0140 | 97.9620 | 90.4179 | 720 | 137 | 721 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 85.0767 | 76.2575 | 96.2025 | 92.3568 | 379 | 118 | 380 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 90.3357 | 83.7931 | 97.9866 | 90.5301 | 729 | 141 | 730 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 84.9321 | 75.9843 | 96.2687 | 92.4165 | 386 | 122 | 387 | 15 | 1 | 6.6667 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 89.6780 | 83.2016 | 97.2477 | 92.2073 | 421 | 85 | 424 | 12 | 1 | 8.3333 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 83.9718 | 75.2508 | 94.9791 | 93.8067 | 225 | 74 | 227 | 12 | 1 | 8.3333 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7493 | 83.4297 | 97.1047 | 92.9146 | 433 | 86 | 436 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 84.1893 | 75.7282 | 94.7791 | 94.2798 | 234 | 75 | 236 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 89.6631 | 83.2392 | 97.1616 | 92.9647 | 442 | 89 | 445 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 84.0230 | 75.3943 | 94.8819 | 94.3278 | 239 | 78 | 241 | 13 | 1 | 7.6923 | |
| asubramanian-gatk | INDEL | I6_15 | func_cds | * | 93.9759 | 90.6977 | 97.5000 | 42.8571 | 39 | 4 | 39 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | func_cds | homalt | 93.3333 | 93.3333 | 93.3333 | 40.0000 | 14 | 1 | 14 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.9948 | 94.8276 | 99.2634 | 69.4944 | 440 | 24 | 539 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.7907 | 95.9438 | 99.7101 | 42.8335 | 615 | 26 | 688 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 87.4751 | 80.0000 | 96.4912 | 84.4687 | 28 | 7 | 55 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.8452 | 98.0861 | 99.6161 | 43.6147 | 410 | 8 | 519 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.6276 | 96.6102 | 98.6667 | 60.1064 | 57 | 2 | 74 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5764 | 81.8182 | 96.5517 | 93.4389 | 27 | 6 | 28 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 87.6827 | 82.3529 | 93.7500 | 94.3060 | 14 | 3 | 15 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1123 | 88.5965 | 98.1132 | 89.0383 | 101 | 13 | 104 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.0958 | 88.1356 | 96.4286 | 90.1060 | 52 | 7 | 54 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2365 | 88.7931 | 98.1481 | 89.7045 | 103 | 13 | 106 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.3641 | 88.5246 | 96.5517 | 90.5383 | 54 | 7 | 56 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2442 | 88.7931 | 98.1651 | 89.8793 | 103 | 13 | 107 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.3908 | 88.5246 | 96.6102 | 90.6051 | 54 | 7 | 57 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 81.7337 | 73.3333 | 92.3077 | 96.1310 | 11 | 4 | 12 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.9630 | 77.7778 | 88.8889 | 95.9641 | 7 | 2 | 8 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | * | 87.5000 | 79.2453 | 97.6744 | 93.5435 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.2029 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | * | 87.5000 | 79.2453 | 97.6744 | 94.2513 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.7598 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | * | 87.5000 | 79.2453 | 97.6744 | 94.4156 | 42 | 11 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 94.8827 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 72.2892 | 62.5000 | 85.7143 | 97.4729 | 5 | 3 | 6 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 97.3545 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.4618 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.5517 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.8333 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 81.4815 | 73.3333 | 91.6667 | 96.8504 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |