PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5201-5250 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7342 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.1905 | 61.5385 | 100.0000 | 64.7059 | 24 | 15 | 24 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.2105 | 72.7273 | 100.0000 | 61.9048 | 40 | 15 | 40 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 88.1356 | 78.7879 | 100.0000 | 55.9322 | 26 | 7 | 26 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 2 | 0 | 2 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 91.6667 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 70.1754 | 54.0541 | 100.0000 | 66.6667 | 20 | 17 | 20 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 54.1353 | 37.1134 | 100.0000 | 32.0755 | 36 | 61 | 36 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 66.6667 | 52.6316 | 90.9091 | 71.7949 | 10 | 9 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 68.7500 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 60.5850 | 44.1176 | 96.6667 | 71.6981 | 30 | 38 | 29 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 59.0289 | 42.4658 | 96.7742 | 72.0721 | 31 | 42 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 44.4444 | 33.3333 | 66.6667 | 80.0000 | 2 | 4 | 2 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 78.7879 | 68.4211 | 92.8571 | 66.6667 | 13 | 6 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 78.7879 | 68.4211 | 92.8571 | 73.5849 | 13 | 6 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 76.4706 | 65.0000 | 92.8571 | 75.0000 | 13 | 7 | 13 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 28.5714 | 20.0000 | 50.0000 | 77.7778 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 76.1905 | 4 | 4 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 81.4815 | 4 | 4 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 57.1429 | 44.4444 | 80.0000 | 82.7586 | 4 | 5 | 4 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.7654 | 0 | 6 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 97.2222 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 87.5000 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3333 | 1 | 1 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | map_siren | hetalt | 71.7865 | 56.5657 | 98.2143 | 72.8155 | 56 | 43 | 55 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | hetalt | 74.3590 | 59.1837 | 100.0000 | 89.2193 | 29 | 20 | 29 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | het | 88.8889 | 80.0000 | 100.0000 | 52.9412 | 8 | 2 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| mlin-fermikit | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 77.2727 | 10 | 2 | 10 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 66.6667 | 8 | 1 | 8 | 0 | 0 | ||
| mlin-fermikit | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||