PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52351-52400 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m1_e0 | het | 72.7273 | 66.6667 | 80.0000 | 86.8421 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | * | 63.1579 | 54.5455 | 75.0000 | 90.3614 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e0 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | * | 63.1579 | 54.5455 | 75.0000 | 90.4762 | 6 | 5 | 6 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l150_m2_e1 | het | 72.7273 | 66.6667 | 80.0000 | 88.0952 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | * | 96.8185 | 95.7447 | 97.9167 | 93.8931 | 45 | 2 | 47 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | segdup | het | 95.9166 | 95.8333 | 96.0000 | 94.4196 | 23 | 1 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | func_cds | * | 99.1690 | 99.4444 | 98.8950 | 25.5144 | 179 | 1 | 179 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | func_cds | homalt | 99.5816 | 100.0000 | 99.1667 | 24.5283 | 119 | 0 | 119 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 84.3537 | 73.8095 | 98.4127 | 62.2754 | 62 | 22 | 62 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.3962 | 88.3929 | 99.0000 | 68.8474 | 99 | 13 | 99 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 45.1613 | 30.4348 | 87.5000 | 27.2727 | 7 | 16 | 7 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | * | 42.4242 | 29.1667 | 77.7778 | 95.4315 | 7 | 17 | 7 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | homalt | 57.1429 | 44.4444 | 80.0000 | 95.0495 | 4 | 5 | 4 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | func_cds | * | 96.4706 | 95.3488 | 97.6190 | 37.3134 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | func_cds | het | 97.9592 | 100.0000 | 96.0000 | 37.5000 | 24 | 0 | 24 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 72.1649 | 57.3770 | 97.2222 | 62.8866 | 35 | 26 | 35 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 79.7299 | 67.0588 | 98.3051 | 62.1795 | 57 | 28 | 58 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 23.2343 | 13.2530 | 94.1176 | 59.5238 | 11 | 72 | 16 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 86.3984 | 76.3713 | 99.4565 | 26.6932 | 181 | 56 | 183 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 93.6508 | 2 | 6 | 2 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m0_e0 | homalt | 33.3333 | 25.0000 | 50.0000 | 93.1034 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | het | 64.5740 | 53.3333 | 81.8182 | 86.4198 | 8 | 7 | 9 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | het | 64.5740 | 53.3333 | 81.8182 | 89.0000 | 8 | 7 | 9 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | het | 62.0690 | 50.0000 | 81.8182 | 89.4231 | 8 | 8 | 9 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | * | 40.0000 | 28.5714 | 66.6667 | 96.1039 | 2 | 5 | 2 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m1_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.2857 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | * | 50.0000 | 37.5000 | 75.0000 | 95.5556 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e0 | homalt | 40.0000 | 33.3333 | 50.0000 | 94.8718 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | * | 50.0000 | 37.5000 | 75.0000 | 95.8333 | 3 | 5 | 3 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l250_m2_e1 | homalt | 40.0000 | 33.3333 | 50.0000 | 95.2381 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_siren | hetalt | 79.3388 | 66.6667 | 97.9592 | 73.6559 | 48 | 24 | 48 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | segdup | homalt | 96.7505 | 95.7447 | 97.7778 | 90.9820 | 45 | 2 | 44 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | * | hetalt | 97.1091 | 94.4891 | 99.8786 | 32.2368 | 823 | 48 | 823 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | HG002complexvar | hetalt | 95.9866 | 92.5806 | 99.6528 | 34.0961 | 287 | 23 | 287 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5756 | 96.6493 | 98.5199 | 55.4070 | 2596 | 90 | 2596 | 39 | 1 | 2.5641 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.9886 | 98.1155 | 99.8774 | 55.5677 | 2447 | 47 | 2443 | 3 | 1 | 33.3333 | |
| mlin-fermikit | SNP | * | map_l250_m0_e0 | het | 35.3963 | 21.6467 | 97.0238 | 84.3210 | 326 | 1180 | 326 | 10 | 1 | 10.0000 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | het | 41.8044 | 26.6036 | 97.5328 | 80.1621 | 1265 | 3490 | 1265 | 32 | 1 | 3.1250 | |
| mlin-fermikit | SNP | * | map_l250_m2_e0 | het | 43.6369 | 28.0901 | 97.7227 | 83.2153 | 1459 | 3735 | 1459 | 34 | 1 | 2.9412 | |
| mlin-fermikit | SNP | * | map_l250_m2_e1 | het | 43.9700 | 28.3625 | 97.7734 | 83.3895 | 1493 | 3771 | 1493 | 34 | 1 | 2.9412 | |
| mlin-fermikit | SNP | * | segdup | het | 97.6489 | 96.6622 | 98.6560 | 85.6660 | 16739 | 578 | 16736 | 228 | 1 | 0.4386 | |
| mlin-fermikit | SNP | ti | * | hetalt | 97.1781 | 94.6735 | 99.8188 | 32.3529 | 551 | 31 | 551 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | HG002complexvar | hetalt | 96.0000 | 92.7536 | 99.4819 | 33.9041 | 192 | 15 | 192 | 1 | 1 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.7510 | 97.9167 | 99.5997 | 47.1770 | 2491 | 53 | 2488 | 10 | 1 | 10.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.9788 | 98.1646 | 99.8066 | 46.6460 | 1551 | 29 | 1548 | 3 | 1 | 33.3333 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 97.1510 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | het | 36.6957 | 22.5910 | 97.6852 | 83.7594 | 211 | 723 | 211 | 5 | 1 | 20.0000 | |