PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52101-52150 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | segdup | * | 98.5505 | 97.7143 | 99.4012 | 90.2624 | 171 | 4 | 166 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | segdup | het | 98.1509 | 97.5904 | 98.7179 | 90.0383 | 81 | 2 | 77 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | func_cds | * | 99.6865 | 99.8678 | 99.5059 | 22.3605 | 18126 | 24 | 18125 | 90 | 1 | 1.1111 | |
| ltrigg-rtg2 | SNP | * | func_cds | het | 99.5132 | 99.8298 | 99.1986 | 22.7101 | 11142 | 19 | 11141 | 90 | 1 | 1.1111 | |
| ltrigg-rtg2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0190 | 98.1121 | 99.9429 | 58.3888 | 1715 | 33 | 1750 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0504 | 99.1851 | 96.9413 | 58.5086 | 4260 | 35 | 4342 | 137 | 1 | 0.7299 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.0353 | 98.9576 | 95.1862 | 61.9773 | 2658 | 28 | 2709 | 137 | 1 | 0.7299 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5424 | 99.7679 | 99.3178 | 59.4259 | 3869 | 9 | 3931 | 27 | 1 | 3.7037 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3488 | 99.7594 | 98.9416 | 60.6388 | 2488 | 6 | 2524 | 27 | 1 | 3.7037 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.1502 | 87.3057 | 95.3488 | 87.7362 | 337 | 49 | 328 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.7724 | 88.0435 | 93.6759 | 87.8424 | 243 | 33 | 237 | 16 | 1 | 6.2500 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.2000 | 97.2028 | 99.2178 | 83.0336 | 2641 | 76 | 2537 | 20 | 1 | 5.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2673 | 97.7324 | 98.8081 | 84.5914 | 1724 | 40 | 1658 | 20 | 1 | 5.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.5100 | 61.9048 | 87.5000 | 94.9126 | 26 | 16 | 28 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.0851 | 59.2593 | 80.0000 | 96.0239 | 16 | 11 | 16 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7995 | 99.6294 | 99.9702 | 32.6604 | 6720 | 25 | 6703 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.8879 | 70.7317 | 97.2222 | 86.6171 | 29 | 12 | 35 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | het | 95.5463 | 91.5878 | 99.8624 | 74.1983 | 4355 | 400 | 4355 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | het | 95.8350 | 92.1448 | 99.8331 | 76.0408 | 4786 | 408 | 4786 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | het | 95.8720 | 92.2112 | 99.8355 | 76.2366 | 4854 | 410 | 4854 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | * | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.4897 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 94.4819 | 97.2222 | 91.8919 | 71.3178 | 35 | 1 | 34 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.4979 | 97.1751 | 93.8776 | 69.0657 | 172 | 5 | 230 | 15 | 1 | 6.6667 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 95.2665 | 96.7213 | 93.8547 | 65.6430 | 118 | 4 | 168 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 53.2753 | 57.5758 | 49.5726 | 84.7656 | 19 | 14 | 58 | 59 | 1 | 1.6949 | |
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 47.1671 | 52.9412 | 42.5287 | 85.0772 | 9 | 8 | 37 | 50 | 1 | 2.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 62.5473 | 53.3333 | 75.6098 | 92.9188 | 8 | 7 | 31 | 10 | 1 | 10.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 64.4258 | 55.5556 | 76.6667 | 93.2584 | 5 | 4 | 23 | 7 | 1 | 14.2857 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 36.3636 | 25.0000 | 66.6667 | 96.8750 | 2 | 6 | 10 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | het | 36.3636 | 25.0000 | 66.6667 | 97.5936 | 1 | 3 | 6 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | * | 52.1739 | 42.8571 | 66.6667 | 97.6654 | 3 | 4 | 8 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m1_e0 | het | 53.3333 | 50.0000 | 57.1429 | 98.2544 | 2 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | * | 59.4595 | 50.0000 | 73.3333 | 97.3022 | 4 | 4 | 11 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e0 | het | 58.5366 | 60.0000 | 57.1429 | 98.3683 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | * | 59.4595 | 50.0000 | 73.3333 | 97.3684 | 4 | 4 | 11 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l250_m2_e1 | het | 58.5366 | 60.0000 | 57.1429 | 98.4091 | 3 | 2 | 4 | 3 | 1 | 33.3333 | |
| qzeng-custom | INDEL | I6_15 | map_siren | homalt | 77.8370 | 87.7778 | 69.9187 | 73.1441 | 79 | 11 | 86 | 37 | 1 | 2.7027 | |
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | het | 87.8049 | 85.7143 | 90.0000 | 37.5000 | 6 | 1 | 9 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | I6_15 | tech_badpromoters | homalt | 66.6667 | 66.6667 | 66.6667 | 57.1429 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | HG002complexvar | hetalt | 97.3511 | 95.1613 | 99.6441 | 38.9130 | 295 | 15 | 280 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | HG002compoundhet | hetalt | 98.5292 | 97.2158 | 99.8786 | 21.9697 | 838 | 24 | 823 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | func_cds | het | 99.6863 | 99.8118 | 99.5610 | 32.9992 | 11140 | 21 | 11112 | 49 | 1 | 2.0408 | |
| qzeng-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 92.3077 | 92.3077 | 82.1918 | 12 | 1 | 12 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0167 | 99.6391 | 98.4019 | 66.3620 | 2485 | 9 | 2463 | 40 | 1 | 2.5000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 80.9524 | 79.0698 | 97.5058 | 34 | 8 | 34 | 9 | 1 | 11.1111 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 74.0741 | 68.9655 | 97.9374 | 20 | 7 | 20 | 9 | 1 | 11.1111 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6338 | 99.4406 | 99.8276 | 58.0012 | 11022 | 62 | 11004 | 19 | 1 | 5.2632 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 68.4211 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.5900 | 97.5610 | 97.6190 | 93.3754 | 40 | 1 | 41 | 1 | 1 | 100.0000 | |