PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51951-52000 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | SNP | * | tech_badpromoters | homalt | 99.3789 | 100.0000 | 98.7654 | 50.6098 | 80 | 0 | 80 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3077 | 100.0000 | 85.7143 | 81.0811 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4268 | 99.6283 | 99.2261 | 57.2682 | 2948 | 11 | 2949 | 23 | 1 | 4.3478 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1298 | 99.5085 | 98.7541 | 58.9047 | 1822 | 9 | 1823 | 23 | 1 | 4.3478 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4691 | 99.4104 | 99.5279 | 48.5945 | 2529 | 15 | 2530 | 12 | 1 | 8.3333 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.5714 | 68.7500 | 91.6667 | 97.1223 | 11 | 5 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 70.5882 | 60.0000 | 85.7143 | 97.7492 | 6 | 4 | 6 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 71.4286 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | hetalt | 88.8889 | 85.7143 | 92.3077 | 75.9259 | 12 | 2 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m1_e0 | hetalt | 90.9091 | 86.2069 | 96.1538 | 77.1930 | 25 | 4 | 25 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | hetalt | 91.2281 | 86.6667 | 96.2963 | 79.0698 | 26 | 4 | 26 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e1 | hetalt | 91.5254 | 87.0968 | 96.4286 | 78.6260 | 27 | 4 | 27 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | map_siren | hetalt | 92.5926 | 87.7193 | 98.0392 | 75.4808 | 50 | 7 | 50 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 79.7101 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4429 | 99.1667 | 99.7207 | 68.4651 | 1428 | 12 | 1428 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6190 | 99.6190 | 99.6190 | 68.6754 | 523 | 2 | 523 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 69.2308 | 94.7368 | 94.8925 | 18 | 8 | 18 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.3529 | 77.7778 | 87.5000 | 88.8889 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 62.5000 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3658 | 98.9242 | 99.8113 | 35.2869 | 2115 | 23 | 2116 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m0_e0 | hetalt | 90.3226 | 87.5000 | 93.3333 | 79.1667 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m1_e0 | hetalt | 90.9091 | 85.3659 | 97.2222 | 77.7778 | 35 | 6 | 35 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e0 | hetalt | 91.1392 | 85.7143 | 97.2973 | 79.7814 | 36 | 6 | 36 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l100_m2_e1 | hetalt | 91.3580 | 86.0465 | 97.3684 | 79.4595 | 37 | 6 | 37 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | homalt | 99.4329 | 99.0211 | 99.8481 | 74.3625 | 1315 | 13 | 1315 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | tv | map_l250_m0_e0 | homalt | 98.9583 | 98.4456 | 99.4764 | 91.6630 | 190 | 3 | 190 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | map_siren | hetalt | 93.5065 | 88.8889 | 98.6301 | 75.8278 | 72 | 9 | 72 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 54.5455 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | homalt | 98.7342 | 100.0000 | 97.5000 | 54.5455 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4130 | 95.2329 | 99.6951 | 36.9231 | 879 | 44 | 327 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l250_m1_e0 | homalt | 71.3120 | 56.8807 | 95.5556 | 96.3444 | 62 | 47 | 86 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e0 | homalt | 73.1839 | 59.1304 | 96.0000 | 96.3262 | 68 | 47 | 96 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | * | map_l250_m2_e1 | homalt | 73.4760 | 59.4828 | 96.0784 | 96.3480 | 69 | 47 | 98 | 4 | 1 | 25.0000 | |
| qzeng-custom | INDEL | * | tech_badpromoters | het | 95.0546 | 94.8718 | 95.2381 | 45.4545 | 37 | 2 | 40 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | * | tech_badpromoters | homalt | 96.8718 | 96.9697 | 96.7742 | 55.7143 | 32 | 1 | 30 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.9362 | 96.0801 | 0 | 0 | 93 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 97.9167 | 95.8478 | 0 | 0 | 47 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 98.1132 | 96.0015 | 0 | 0 | 104 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.1132 | 95.6414 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 98.0263 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.7528 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002complexvar | homalt | 96.9739 | 94.4637 | 99.6212 | 60.8309 | 273 | 16 | 263 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.7599 | 95.7237 | 99.8847 | 53.2615 | 873 | 39 | 866 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.2977 | 92.4479 | 98.3287 | 77.4356 | 355 | 29 | 353 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.1497 | 91.2791 | 99.3631 | 71.2980 | 157 | 15 | 156 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9599 | 98.1796 | 99.7528 | 64.8872 | 809 | 15 | 807 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7409 | 97.7839 | 99.7167 | 56.1491 | 353 | 8 | 352 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.6847 | 74.0157 | 98.9474 | 35.8108 | 94 | 33 | 94 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.0362 | 72.0588 | 97.9592 | 95.6980 | 49 | 19 | 48 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 75.0000 | 66.6667 | 85.7143 | 95.2055 | 6 | 3 | 6 | 1 | 1 | 100.0000 | |