PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51851-51900 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | * | 98.1563 | 97.8161 | 98.4988 | 85.2244 | 851 | 19 | 853 | 13 | 1 | 7.6923 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1228 | 98.8338 | 99.4135 | 83.7309 | 339 | 4 | 339 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | * | 95.7635 | 96.0227 | 95.5056 | 89.8575 | 169 | 7 | 170 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 87.2624 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4772 | 97.9798 | 98.9796 | 85.7765 | 194 | 4 | 194 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 97.0975 | 96.5318 | 97.6699 | 88.6863 | 501 | 18 | 503 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5000 | 98.0100 | 98.9950 | 87.6012 | 197 | 4 | 197 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | * | 97.1634 | 96.6102 | 97.7230 | 88.7825 | 513 | 18 | 515 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5222 | 98.0392 | 99.0099 | 87.7204 | 200 | 4 | 200 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 92.9577 | 93.3962 | 92.5234 | 94.8483 | 99 | 7 | 99 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5517 | 95.4545 | 97.6744 | 93.4947 | 42 | 2 | 42 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 93.3921 | 93.8053 | 92.9825 | 95.4272 | 106 | 7 | 106 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6292 | 95.5556 | 97.7273 | 94.5342 | 43 | 2 | 43 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 93.4498 | 93.8596 | 93.0435 | 95.5461 | 107 | 7 | 107 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7033 | 95.6522 | 97.7778 | 94.5718 | 44 | 2 | 44 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | het | 98.5075 | 98.0369 | 98.9826 | 78.7269 | 1648 | 33 | 1654 | 17 | 1 | 5.8824 | |
| raldana-dualsentieon | INDEL | I6_15 | * | hetalt | 94.4979 | 89.5802 | 99.9870 | 36.2816 | 7660 | 891 | 7700 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.7931 | 91.9551 | 99.9655 | 41.6230 | 2869 | 251 | 2898 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.4655 | 91.3500 | 99.9693 | 40.4962 | 3221 | 305 | 3261 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 94.9982 | 90.5081 | 99.9572 | 32.8251 | 2298 | 241 | 2334 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.5177 | 91.4612 | 99.9507 | 31.0075 | 2003 | 187 | 2026 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.9357 | 90.3933 | 99.9588 | 34.5998 | 2390 | 254 | 2426 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.4655 | 91.3500 | 99.9693 | 40.4962 | 3221 | 305 | 3261 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8397 | 95.0820 | 98.6637 | 80.8692 | 464 | 24 | 443 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.8996 | 90.3444 | 99.9384 | 37.7684 | 1600 | 171 | 1622 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1406 | 96.7672 | 99.5536 | 69.6682 | 449 | 15 | 446 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6479 | 90.3226 | 99.4083 | 67.9924 | 168 | 18 | 168 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| raldana-dualsentieon | SNP | * | * | hetalt | 99.7125 | 99.5408 | 99.8848 | 38.3960 | 867 | 4 | 867 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.8272 | 96.2865 | 99.4180 | 65.5827 | 2904 | 112 | 2904 | 17 | 1 | 5.8824 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.5423 | 99.8852 | 59.7783 | 1740 | 8 | 1740 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3649 | 84.9741 | 98.7952 | 90.6820 | 328 | 58 | 328 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.8446 | 80.7971 | 98.6726 | 90.8055 | 223 | 53 | 223 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 92.9577 | 89.1892 | 97.0588 | 77.0270 | 33 | 4 | 33 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 75.6757 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | * | 78.5714 | 73.3333 | 84.6154 | 89.9225 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m1_e0 | het | 77.7778 | 77.7778 | 77.7778 | 90.0000 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | * | 78.5714 | 73.3333 | 84.6154 | 91.4474 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e0 | het | 77.7778 | 77.7778 | 77.7778 | 91.2621 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | * | 78.5714 | 73.3333 | 84.6154 | 91.5584 | 11 | 4 | 11 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l125_m2_e1 | het | 77.7778 | 77.7778 | 77.7778 | 91.4286 | 7 | 2 | 7 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | * | 76.1905 | 72.7273 | 80.0000 | 88.8889 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 88.8889 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | * | 76.1905 | 72.7273 | 80.0000 | 90.4762 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 90.1408 | 5 | 1 | 5 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | hetalt | 74.3243 | 62.5000 | 91.6667 | 84.0000 | 10 | 6 | 11 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | * | 96.8855 | 97.8723 | 95.9184 | 93.9431 | 46 | 1 | 47 | 2 | 1 | 50.0000 | |