PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51751-51800 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6183 | 99.6183 | 99.6183 | 66.9401 | 522 | 2 | 522 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7381 | 99.7754 | 99.7008 | 54.7087 | 1333 | 3 | 1333 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6495 | 99.7661 | 99.5333 | 55.1309 | 853 | 2 | 853 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8619 | 99.8160 | 99.9079 | 64.2822 | 2170 | 4 | 2170 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8558 | 99.8558 | 99.8558 | 64.1880 | 1385 | 2 | 1385 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8263 | 99.7917 | 99.8610 | 69.1268 | 1437 | 3 | 1437 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8360 | 99.8906 | 99.7814 | 68.9936 | 913 | 1 | 913 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8719 | 99.8294 | 99.9145 | 39.6596 | 4681 | 8 | 4676 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3401 | 41 | 1 | 41 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.9420 | 99.9130 | 99.9710 | 37.2906 | 3447 | 3 | 3443 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9532 | 99.9532 | 99.9531 | 38.2523 | 2137 | 1 | 2133 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 48.9362 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | tech_badpromoters | het | 98.5075 | 100.0000 | 97.0588 | 39.2857 | 33 | 0 | 33 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9810 | 96.5174 | 97.4490 | 87.0456 | 194 | 7 | 191 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4186 | 99.4186 | 99.4186 | 80.4989 | 171 | 1 | 171 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3917 | 99.1505 | 99.6341 | 69.2077 | 817 | 7 | 817 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8617 | 100.0000 | 99.7238 | 62.2523 | 361 | 0 | 361 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7835 | 99.7835 | 99.7835 | 62.5000 | 461 | 1 | 461 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7812 | 94.0000 | 99.7319 | 34.9040 | 329 | 21 | 372 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 63.6150 | 154 | 3 | 154 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 75.0000 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 78.9474 | 75.0000 | 83.3333 | 88.4615 | 6 | 2 | 5 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 41.6667 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | * | hetalt | 96.8333 | 93.8702 | 99.9896 | 62.1760 | 9617 | 628 | 9660 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | hetalt | 97.5400 | 95.2663 | 99.9249 | 72.3364 | 1288 | 64 | 1331 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002compoundhet | hetalt | 96.8240 | 93.8528 | 99.9896 | 57.7055 | 9588 | 628 | 9588 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2916 | 98.8069 | 99.7809 | 75.8402 | 911 | 11 | 911 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6226 | 99.3415 | 99.9054 | 80.1278 | 1056 | 7 | 1056 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8647 | 100.0000 | 99.7297 | 81.5645 | 369 | 0 | 369 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0506 | 97.8003 | 98.3022 | 82.9226 | 578 | 13 | 579 | 10 | 1 | 10.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4141 | 97.5779 | 97.2509 | 89.7535 | 282 | 7 | 283 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 89.0933 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.4479 | 97.3684 | 99.5516 | 86.1491 | 222 | 6 | 222 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5386 | 97.5207 | 99.5781 | 86.9780 | 236 | 6 | 236 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 96.1877 | 95.9064 | 96.4706 | 94.3428 | 164 | 7 | 164 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 95.5357 | 96.3964 | 94.6903 | 94.5725 | 107 | 4 | 107 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 96.4578 | 96.1957 | 96.7213 | 94.6460 | 177 | 7 | 177 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 95.9016 | 96.6942 | 95.1220 | 94.7771 | 117 | 4 | 117 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 96.4770 | 96.2162 | 96.7391 | 94.7489 | 178 | 7 | 178 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 94.8612 | 118 | 4 | 118 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_siren | het | 99.0760 | 98.8142 | 99.3392 | 78.2192 | 2250 | 27 | 2255 | 15 | 1 | 6.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | * | hetalt | 96.4666 | 93.1857 | 99.9870 | 32.1144 | 7617 | 557 | 7666 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | hetalt | 97.2668 | 94.7680 | 99.9010 | 47.1204 | 960 | 53 | 1009 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.1644 | 85.5030 | 99.9515 | 30.1491 | 2023 | 343 | 2061 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4144 | 93.0885 | 99.9868 | 28.9050 | 7502 | 557 | 7550 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8506 | 100.0000 | 97.7273 | 76.5957 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7333 | 100.0000 | 99.4681 | 59.3514 | 374 | 0 | 374 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.4901 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.3020 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |